View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2102_high_2 (Length: 532)
Name: NF2102_high_2
Description: NF2102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2102_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 523
Target Start/End: Complemental strand, 42738850 - 42738340
Alignment:
| Q |
17 |
attagtagtggtataataatgaaattcaaaaaatactttgcacatacaggcctgtagtgagatgataatgcccgaaggtgcaagcaataaggaaagcatt |
116 |
Q |
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| T |
42738850 |
attagtagtggtataataatgaaattcaaaaaatactttgcacatacaggcctgtagtgagatgataatgcccgaaggtgcaagcagtaaggaaagcatt |
42738751 |
T |
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| Q |
117 |
ttcccggaatctaagtggtcagtcaaagacagaaatgcatactgcaaatttgcctacaacgtagtaccaagacccaactggattacatcagaatttggtg |
216 |
Q |
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| T |
42738750 |
ttcccggaatctaagtggtcagtcaaagacagaaatgcatactgcaaatttgcctacaacgtagtaccaagacccaactggattacatcagaatttggtg |
42738651 |
T |
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| Q |
217 |
gccatgtgagttata----attactatatattatcattagatttttaatttggtttgatatagtataaacttacattttgcatatattgccaagttcgtg |
312 |
Q |
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| T |
42738650 |
gccatgtgagttatatataattactatatattatcatttgatttttaatttggtttgatatagtataaacttacattttgcatatattgccaagttcgtg |
42738551 |
T |
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| Q |
313 |
ctgattccatgcattgatgtattatatgttatctgcagaatattgaaatagttctcaaaagatctgtgggaaacatcatatttttcaatggtttaagaga |
412 |
Q |
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| T |
42738550 |
ctgattccatgcattgatgtattatatgttatctgcagaatattgaaatagttctcaaaagatctgtgggaaacatcatatttttcaatggtttaagaga |
42738451 |
T |
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| Q |
413 |
cccttggagtggtggagggtaaagccttattatctcttctatcatcataccattattaacattgcaatatattttaggcatgctattattatttttatgt |
512 |
Q |
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| T |
42738450 |
cccttggagtggtggagggtaaagccttattatctcttctatcatcataccattattaacattgcaatatattttaggcatgctattattatttttatgt |
42738351 |
T |
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| Q |
513 |
catagtataat |
523 |
Q |
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| T |
42738350 |
catagtataat |
42738340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 433
Target Start/End: Complemental strand, 42746033 - 42745962
Alignment:
| Q |
362 |
agttctcaaaagatctgtgggaaacatcatatttttcaatggtttaagagacccttggagtggtggagggta |
433 |
Q |
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| T |
42746033 |
agttctgaaaagatatgggagcaacattatcttcttcaatggtttaagagacccttggagtggtggagggta |
42745962 |
T |
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