View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2102_high_9 (Length: 246)

Name: NF2102_high_9

Description: NF2102

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2102_high_9

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 181; E-Value: 6e-98

Query Start/End: Original strand, 1 - 246

Target Start/End: Original strand, 42738125 - 42738361

Alignment:

Q	1	tcctatacccacaacaaacccgaataaacagagagaaacacgaaaattttgaagagtaacnnnnnnnnnnnnnnnnnnnncgcaaattaattagctaacc	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42738125	tcctatacccacaacaaacccgaataaacagagagaaacacgaaaattttgaagagtaacaaaattaaaaa---------cgcaaattaattagctaacc	42738215	T

Q	101	ttctttagcaactatagcaattatagtttttgatatattcttcaacactctgcaaataaactcatatttaacgtaacgtggttgtaatatgaaattgtaa	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42738216	ttctttagcaactatagcaattatagtttttgatatattcttcaacactctgcaaataaactcatatttaacgtaacgtggttgtaatatgaaattgtaa	42738315	T

Q	201	taaccgattttagcatatagtgacattatactatgacataaaaata	246	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42738316	taaccgattttagcatatagtgacattatactatgacataaaaata	42738361	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2

Raw Score: 40; E-Value: 0.00000000000009

Query Start/End: Original strand, 95 - 154

Target Start/End: Original strand, 42745756 - 42745815

Alignment:

Q	95	ctaaccttctttagcaactatagcaattatagtttttgatatattcttcaacactctgca	154	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	42745756	ctaaccttcttttgcaactatggcaattaaagtttttgatatattcttcaataccctgca	42745815	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]