View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2102_low_11 (Length: 218)
Name: NF2102_low_11
Description: NF2102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2102_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 40481643 - 40481460
Alignment:
| Q |
17 |
gaagcatgttggaaaagtgtgtgcaatatggagaaatcaaattgccaatatggattcttcaattgtcacagtattaaagatgctccaagagtagcttggt |
116 |
Q |
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| T |
40481643 |
gaagcatgttggaaaagtgtgtgcaatatggagaaatcaaattgccaatatggattcttcaattgtcacagtattaaagatgctccaagagtagcttggt |
40481544 |
T |
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| Q |
117 |
ttatagctagtaatgtcacaaatttatgttcaccaaatgccggcttttatccgtttggtatatatgctgatgccatgacttcca |
200 |
Q |
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| T |
40481543 |
ttatagctagtaatgtcacaaatttatgttcaccaaatgccggcttttatccgtttggtatatatgctgatgccatgacttcca |
40481460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 40512317 - 40512134
Alignment:
| Q |
17 |
gaagcatgttggaaaagtgtgtgcaatatggagaaatcaaattgccaatatggattcttcaattgtcacagtattaaagatgctccaagagtagcttggt |
116 |
Q |
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| T |
40512317 |
gaagcatgttggaaaagtgtgtgcaatatggagaaatcaaattgccaatatggattcttcaattgtcacagtattaaagatgctccaagagtagcttggt |
40512218 |
T |
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| Q |
117 |
ttatagctagtaatgtcacaaatttatgttcaccaaatgccggcttttatccgtttggtatatatgctgatgccatgacttcca |
200 |
Q |
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| T |
40512217 |
ttatagctagtaatgtcacaaatttatgttcaccaaatgccggcttttatccgtttggtatatatgctgatgccatgacttcca |
40512134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 21612599 - 21612663
Alignment:
| Q |
125 |
agtaatgtcacaaatttatgttcaccaaatgccggcttttatccgtttggtatatatgctgatgc |
189 |
Q |
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| T |
21612599 |
agtaatgtcacaaatttatgctcaccaaattctctcttttatcagtttggtatatatggtgatgc |
21612663 |
T |
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