View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2102_low_4 (Length: 356)
Name: NF2102_low_4
Description: NF2102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2102_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 26 - 345
Target Start/End: Original strand, 51531523 - 51531842
Alignment:
| Q |
26 |
gatggtttttatcatgatcgatttctcatgaaatatatgtcacactaaatagtcatgatatcgtatcattgacagagaccaatgatttctagggaaaaaa |
125 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51531523 |
gatggtttttatcatgatcggtttctcatgaaatatacgtcacactaaatagtcatgatatcgtatcattgacagagaccaatgatttctagggaaaaaa |
51531622 |
T |
|
| Q |
126 |
gtaattacttaccaatatccattttcttcttaaaattgaacaagtgttattcacgatcttcttcatgataaagagtaatatactcggtaaggattaaaat |
225 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51531623 |
gtaattacttagcaatatccattttcttcttaaaattgaacaagtgttattcacgatgttcttcataataaagagtaatatactcggtaaggattaaaat |
51531722 |
T |
|
| Q |
226 |
ctttaacataaaacacacatgaataaatgaaaatgtcatcaatcacacacattctcatgtcnnnnnnnnnccgtgcatgcacgcaaccattttccttact |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51531723 |
ctttaacataaaacacacatgaataaatgaaaatgtcatcaatcacacacattctcatgtctttttttttccgtgcatgcacgcaaccattttccttact |
51531822 |
T |
|
| Q |
326 |
atagtagaaaaatgattcat |
345 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
51531823 |
atagtagaaaaatgattcat |
51531842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 51531059 - 51531109
Alignment:
| Q |
236 |
aaacacacatgaataaatgaaaatgtcatcaatcacacacattctcatgtc |
286 |
Q |
| |
|
||||||| | ||||||||||||| |||| |||| ||||||||||||||||| |
|
|
| T |
51531059 |
aaacacaaacgaataaatgaaaaagtcaccaattacacacattctcatgtc |
51531109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University