View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2102_low_5 (Length: 352)
Name: NF2102_low_5
Description: NF2102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2102_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 43996720 - 43997047
Alignment:
| Q |
1 |
ttgaagatgaacagtgttgtttgaaaattatcaattgtgttcttatattctcttacttattcaaattagtcgttgtttaaagttacttggttgcattata |
100 |
Q |
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| T |
43996720 |
ttgaagatgaacagtgttgtttgaaaattatcaattgtgttcttatattctcttacttattcaatttagtcgttgttta------cttggttgcattata |
43996813 |
T |
|
| Q |
101 |
acccatgacttgagtaatgagtatttaaatcatagtattatagtgtcaaattaaagcatattcatgagtgaattatttcacttattatcaaatcgatgat |
200 |
Q |
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| T |
43996814 |
acccatgacttgagtaatgagtatttaaatcatagtattatagtgtcaaattaaaacatattcatcattgaattatttcacttactatcaaatcgatgat |
43996913 |
T |
|
| Q |
201 |
tgcataatctaaattgtaactatcattgttctcaccactatcaacttcaatattattttggttcgaaccaccaatttcacccata-ttgtaatctaaatt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
43996914 |
tgcataatctaaattgtaactatcattgttctcaccactatcaacttcaatattattttggttggaaccaccaatttcacccatatttgtaatctaaatt |
43997013 |
T |
|
| Q |
300 |
actatattcactggattaatcaaaatcaagtgcg |
333 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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| T |
43997014 |
actatattcagtggattaatcaaaatcaagtgcg |
43997047 |
T |
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