View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2102_low_6 (Length: 315)
Name: NF2102_low_6
Description: NF2102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2102_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 42825170 - 42825474
Alignment:
| Q |
1 |
attttcatccacactagttgctttctttctttttgaattactactatctttgatatctctgttaggtcctctattgtctttagacctcgtggagtaccta |
100 |
Q |
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| T |
42825170 |
attttcatccacactagttgctttctttctttttgaattactactatctttgatatctctgttaggtcctctattgtctttagacctcgtggagtaccta |
42825269 |
T |
|
| Q |
101 |
ggtttcttacctttcccaaccttagcaacaagttccttatcatcttcactatcaccattccacacgtcatcctcgttgtctctaaatactttccgctttc |
200 |
Q |
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| T |
42825270 |
ggtttcttacctttcccaaccttagcaacaagttccttatcatcttcactatcaccattccacacgtcatcctcgttgtctctaaatactttccgctttc |
42825369 |
T |
|
| Q |
201 |
cctttattttccttttctcctcaaaatcatcctcatcctcactttctttgctaggctcctcgaggaaccactcccaattctccacattccggatcatgcc |
300 |
Q |
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| T |
42825370 |
cctttattttccttttctcctcaaaatcatcctcatcctcactttctttgctaggctcctcgaggaaccactcccaattctccacattccggatcatgcc |
42825469 |
T |
|
| Q |
301 |
ctttg |
305 |
Q |
| |
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||||| |
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| T |
42825470 |
ctttg |
42825474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 280
Target Start/End: Original strand, 42846088 - 42846203
Alignment:
| Q |
165 |
cgtcatcctcgttgtctctaaatactttccgctttccctttattttccttttctcctcaaaatcatcctcatcctcactttctttgctaggctcctcgag |
264 |
Q |
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|||||||||||||||||||||||||||| | ||||||||| |||||| | |||||| ||||||||| ||||| |||||||||||||||| |||| |
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| T |
42846088 |
cgtcatcctcgttgtctctaaatacttttcactttcccttcattttcatcatctccttaaaatcatctgcatccatgttttctttgctaggctctgcgag |
42846187 |
T |
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| Q |
265 |
gaaccactcccaattc |
280 |
Q |
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| T |
42846188 |
ggaccactcccaattc |
42846203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 213 - 304
Target Start/End: Original strand, 42835460 - 42835555
Alignment:
| Q |
213 |
ttttctcctcaaaatcatcctcatcctcac----tttctttgctaggctcctcgaggaaccactcccaattctccacattccggatcatgcccttt |
304 |
Q |
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||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||| |
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| T |
42835460 |
ttttctcctcaaaatcatcctcatcattccctgctttctttgctaggctcctcgaggaaccactcttaattctccacattcccgattatgtccttt |
42835555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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