View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2102_low_7 (Length: 301)
Name: NF2102_low_7
Description: NF2102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2102_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 680300 - 680009
Alignment:
| Q |
1 |
tttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttaggaaataaaccccaccatattctcaaacctttaaacnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
680300 |
tttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttaggaaataaaccccaccatattctcaaacctttaaacaaaa |
680201 |
T |
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| Q |
101 |
nnncaaccgttgttgtt------ctgctgcattgaatgaccctcaaatataccattgggaactcaaaccctagttttgtagagaaatggcggatggtaga |
194 |
Q |
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| T |
680200 |
aaacaaccgttgttgttgttgttctgctgcattgaatgaccctcaaatataccattgggaactcaaaccctagttttgtagagaaatggcggatggtaga |
680101 |
T |
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| Q |
195 |
agcgatggggaggaagacccaaacgacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttctcttcgatgt |
286 |
Q |
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| T |
680100 |
agcgatggggaggaagacccaaacgacatcatcgtccatacggctggaaccataacatctccgccaccacttcccactcttctcttcgatgt |
680009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 748226 - 747932
Alignment:
| Q |
1 |
tttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttaggaaataaaccccacca------------tattctcaaac |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |
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| T |
748226 |
tttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttagcaaataaaccccaccagaaaaaaaaatatattctaaaac |
748127 |
T |
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| Q |
89 |
ctttaaacnnnnnnncaaccgttgttgtt---ctgctgcattgaatgaccctcaaatataccattgggaactcaaaccctagttttgtagagaaatggcg |
185 |
Q |
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| T |
748126 |
ctttaaaaaaa-----aaccgttgttgttgttctgctgcattgaatgaccctcaaatataccatcga-aactcaaaccctaattttgtagagaaatggcg |
748033 |
T |
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| Q |
186 |
gatggtagaagcgatggggaggaagacccaaacgacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttctcttcgatg |
285 |
Q |
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|| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
748032 |
gagggtagaagcgatgaggaggaagatccaaacgacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttccattcgatg |
747933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 2630430 - 2630503
Alignment:
| Q |
136 |
ctcaaatataccattgggaactcaaaccctagttttgtagagaaatggcggatggtagaagcgatggggaggaaga |
211 |
Q |
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||||||||||||||| ||| |||||||||| |||| |||||||||||||| ||||||||||| ||||| ||||| |
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| T |
2630430 |
ctcaaatataccatttagaattcaaaccctaatttt--agagaaatggcggagggtagaagcgacggggaagaaga |
2630503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 2634861 - 2634905
Alignment:
| Q |
242 |
aaccataacatctccgccgccacttcccactcttctcttcgatgt |
286 |
Q |
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| T |
2634861 |
aaccataacatctccgccgccacttccgactcttccgttcgatgt |
2634905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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