View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2102_low_8 (Length: 250)
Name: NF2102_low_8
Description: NF2102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2102_low_8 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 24142407 - 24142647
Alignment:
| Q |
10 |
acatcatcaagtgttattgtcatctccctaattggaagattgaagttagacgcttcctcgttccatctcccaacaaaagtagataaaaaatcgtggtaaa |
109 |
Q |
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| T |
24142407 |
acatcatcaagtgttattgtcatctccctaattggaagattgaagttagacacctcctcgttccatctcccaacaaaagtagataaaaaatcgtggtaaa |
24142506 |
T |
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| Q |
110 |
ggataggataactgactgtagccactgaagtccaccggctcacatggcatttttgaaccatcactcttgcatcctatccaaatttagttcttgtatagca |
209 |
Q |
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| T |
24142507 |
ggataggataactgactgtagccactgaagtccaccggctcacatggcatttttgaaccatcactcttgcatcctatccaaatttagttcttgtatagca |
24142606 |
T |
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| Q |
210 |
gtagcttttttccgttattcacattaagttgactcgccact |
250 |
Q |
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| T |
24142607 |
gtagcttttttccgttattcacattaagttgacacgccact |
24142647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 20625727 - 20625647
Alignment:
| Q |
128 |
tagccactgaagtccaccggctcacatggcatttttgaaccatcactcttgcatcctatccaaatttagttcttgtatagc |
208 |
Q |
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| T |
20625727 |
tagccactgaagtccattggatcacatggcctctttgaaccatcgctcttgcatcctatccacatctggttcttgtatagc |
20625647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 16363079 - 16363037
Alignment:
| Q |
152 |
catggcatttttgaaccatcactcttgcatcctatccaaattt |
194 |
Q |
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| T |
16363079 |
catggcatctttgaaccatcattcttgcatgctatccaaattt |
16363037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 604 - 711
Alignment:
| Q |
126 |
tgtagccactgaagtccaccggctcacatggcatttttgaaccatcactcttgcatcctatccaaatttagttcttgtatag-cagtagcttttttccgt |
224 |
Q |
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|||||||| |||||||||| ||| |||| ||| ||||| |||| |||||||||||||||||||| | |||||||||||| |||||||||||| |||| |
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| T |
604 |
tgtagccattgaagtccacttactcgcatgacatctttgacccattgctcttgcatcctatccaaatgtggttcttgtatagccagtagctttttgccgt |
703 |
T |
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| Q |
225 |
tattcaca |
232 |
Q |
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| T |
704 |
tgttcaca |
711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 1771956 - 1771900
Alignment:
| Q |
152 |
catggcatttttgaaccatcactcttgcatcctatccaaatttagttcttgtatagc |
208 |
Q |
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| T |
1771956 |
catggcatctttgaatcatcgctcttgcatcctatccaaatttgactcttgtatagc |
1771900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 42229626 - 42229583
Alignment:
| Q |
147 |
gctcacatggcatttttgaaccatcactcttgcatcctatccaa |
190 |
Q |
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| T |
42229626 |
gctcacgtggtatctttgaaccatcactcttgcatcctatccaa |
42229583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 21118303 - 21118225
Alignment:
| Q |
10 |
acatcatcaagtgttattgtcatctccctaattggaagattgaagttagacgcttcctcgttccatctcccaacaaaag |
88 |
Q |
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| T |
21118303 |
acatcatcaagtgtcattgttatctccttaatcgaaaaatggaagctagacgtctcctcgttccatctttcaacaaaag |
21118225 |
T |
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