View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21030_high_1 (Length: 431)
Name: NF21030_high_1
Description: NF21030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21030_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Original strand, 24749987 - 24750394
Alignment:
| Q |
16 |
ccttcttcccctaaaccaatacccctttcctcaatccacctttcattcctcccacattctcaaaatctctctttatccatcaaagttacaaaattttaac |
115 |
Q |
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| T |
24749987 |
ccttcttcccctaaaccaatacccctttcctcaatccacctttcattcctcccacattctcaaaatctctctttatccatcaaagttacaaaattttaac |
24750086 |
T |
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| Q |
116 |
caaaaaacccaacnnnnnnnntcaattaactagttacaatgccaccaatatctggaaaactattcaccgttagtttgataagtttttggtatgcatcaaa |
215 |
Q |
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| T |
24750087 |
caaaaaacccaacaaaaaaaatcaattaactagttacaatgccaccaatatctggaaaactattcaccgttagtttgataagtttttggtatgcatcaaa |
24750186 |
T |
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| Q |
216 |
cattggtgtattactattaaacaagtaccttttaagcaactatggtttcaagtacccaatattcttaacactatgtcacatgatggcatgttcaatgtta |
315 |
Q |
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| T |
24750187 |
cattggtgtattactattaaacaagtaccttttaagcaactatggtttcaagtacccaatattcttaacactatgtcacatgatggcatgttcaatgtta |
24750286 |
T |
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| Q |
316 |
agttacattgcaatatcatggatgaaggtggtgccattgcaaacagtgagatcaagggtacaatttgtgaagatatcatcacttggacttatattttgtt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24750287 |
agttacattgcaatatcatggatgaaggtggtgccattgcaaacagtgagatcaagggtacaatttgtgaagatatcatcacttggacttatattttgtt |
24750386 |
T |
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| Q |
416 |
tgtctgtg |
423 |
Q |
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|||||||| |
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| T |
24750387 |
tgtctgtg |
24750394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 31330236 - 31330303
Alignment:
| Q |
202 |
tggtatgcatcaaacattggtgtattactattaaacaagtaccttttaagcaactatggtttcaagta |
269 |
Q |
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|||||| |||| ||||||||||| | ||||| |||||||| | ||||||||||||||||||||||| |
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| T |
31330236 |
tggtattcatccaacattggtgttcttctattgaacaagtatttgttaagcaactatggtttcaagta |
31330303 |
T |
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