View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21030_low_1 (Length: 543)
Name: NF21030_low_1
Description: NF21030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21030_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Original strand, 49993720 - 49994233
Alignment:
| Q |
19 |
tccctgttactcaaagatttagactttggtaaatcttgaacttttctaacatatttaatagcagttaaagcaaaagacaaaccttgtgcaagctgaatcc |
118 |
Q |
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| T |
49993720 |
tccctgttactcaaagatttagactttggtaaatcttgaacttttctaacatatttaatagcagttaaagcaaaagacaaaccttgtgcaagctgaatcc |
49993819 |
T |
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| Q |
119 |
ctcgaacaacacataaaggtataagcttgtaagccaatttcatcaacccagttaaacccaaaaccaataaaacagctccggttaagataccggaagccat |
218 |
Q |
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| T |
49993820 |
ctcgaacaacacataaaggtataagcttgtaagccaatttcatcaacccagtaaaacccaaaaccaataaaacagctccggttaagataccggaagccat |
49993919 |
T |
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| Q |
219 |
gatctccgggataccgaaagaggggtcggagagtgcaacggcagctatggatttcatgggctgaactggcataggaacaccgtacatggcaccggtgagg |
318 |
Q |
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| T |
49993920 |
gatctccgggataccgaaagaggggtcggagagtgcaacggcagctatggatttcatgggctgaactggcataggaacaccgtacatggcaccggtgagg |
49994019 |
T |
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| Q |
319 |
aagttatagaagccggtgaaaatcaaagtggtgccaaggttgaggtttttggaaagggtgagcgaaagtactattggtatgtatgtgccaaggtcaccca |
418 |
Q |
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| T |
49994020 |
aagttatagaagccggtgaaaatcaaagtggtgccaaggttgaggtttttggaaagggtgagtgaaagtactattggtatgtatgtgccaaggtcaccca |
49994119 |
T |
|
| Q |
419 |
tggctccattgagttcagacaatgttgaatggaaatttaagttgnnnnnnnnnnnnngtatggtggtgagtcttgtgggagtggtggtgggaagagtttg |
518 |
Q |
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| T |
49994120 |
tggctccattgagttcagataatgttgaatggaaatttaagttgttttttactttttgtatggtggtgagtcttgtgggagtggtggtgggaagagtttg |
49994219 |
T |
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| Q |
519 |
ggggtttgatgatg |
532 |
Q |
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| T |
49994220 |
ggggtttgatgatg |
49994233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 25798589 - 25798675
Alignment:
| Q |
30 |
caaagatttagactttggtaaatcttgaacttttctaacatatttaatagcagttaaagcaaaagacaaaccttgtgcaagctgaat |
116 |
Q |
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| T |
25798589 |
caaagctttagacttgggaagatcttgcactttcttcacatatttaacagcagttaaagcaaatgacaaaccttgtgctagttgaat |
25798675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 25800028 - 25800093
Alignment:
| Q |
388 |
actattggtatgtatgtgccaaggtcacccatggctccattgagttcagacaatgttgaatggaaa |
453 |
Q |
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| T |
25800028 |
actatgggtatgtaggtgccaaggtcacccatggcaccatttaattcagcccattttgaatggaaa |
25800093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 1807622 - 1807516
Alignment:
| Q |
31 |
aaagatttagactttggtaaatcttgaacttttctaacatatttaatagcagttaaagcaaaagacaaaccttgtgcaagctgaatccctcgaacaacac |
130 |
Q |
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| T |
1807622 |
aaagatttagactttggaagatcttgcacttttctcacatatttaacagctgttaaagcaaatgacaaaccttgtgctagttgaattcccctcacaacag |
1807523 |
T |
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| Q |
131 |
ataaagg |
137 |
Q |
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| T |
1807522 |
ataaagg |
1807516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 1875262 - 1875123
Alignment:
| Q |
31 |
aaagatttagactttggtaaatcttgaacttttctaacatatttaatagcagttaaagcaaaagacaaaccttgtgcaagctgaatccctcgaacaacac |
130 |
Q |
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| T |
1875262 |
aaagctttagactttggaagatcttgcattttcctcacatatttaacagcagttaaagcaaatgataaaccttgtgctagttgaattcccctcacaacag |
1875163 |
T |
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| Q |
131 |
ataaaggtataagcttgtaagccaatttcatcaacccagt |
170 |
Q |
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| T |
1875162 |
ataaaggaataaacttgtacaccaactgcatcaacccagt |
1875123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 449
Target Start/End: Complemental strand, 1874666 - 1874599
Alignment:
| Q |
382 |
gaaagtactattggtatgtatgtgccaaggtcacccatggctccattgagttcagacaatgttgaatg |
449 |
Q |
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| T |
1874666 |
gaaagaactattggtatgtaggtgccaaggtcacccatggcaccatttagttcagcccattttgaatg |
1874599 |
T |
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