View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21030_low_10 (Length: 299)

Name: NF21030_low_10
Description: NF21030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21030_low_10
NF21030_low_10
[»] chr5 (10 HSPs)
chr5 (53-141)||(19555208-19555296)
chr5 (10-141)||(43229145-43229292)
chr5 (52-119)||(20654696-20654763)
chr5 (53-139)||(39144457-39144543)
chr5 (53-122)||(23153630-23153698)
chr5 (52-120)||(26108582-26108650)
chr5 (240-280)||(43229307-43229347)
chr5 (10-50)||(19555314-19555354)
chr5 (63-122)||(4921484-4921543)
chr5 (65-122)||(41697349-41697406)
[»] chr1 (12 HSPs)
chr1 (53-140)||(14592065-14592152)
chr1 (10-140)||(911154-911299)
chr1 (53-141)||(35950021-35950108)
chr1 (59-122)||(1047877-1047940)
chr1 (63-141)||(34079913-34079991)
chr1 (53-141)||(46599075-46599163)
chr1 (64-141)||(1048981-1049058)
chr1 (240-280)||(911391-911431)
chr1 (63-122)||(8249001-8249060)
chr1 (52-95)||(46101922-46101965)
chr1 (54-99)||(9239473-9239518)
chr1 (52-119)||(51192708-51192777)
[»] chr7 (14 HSPs)
chr7 (53-137)||(41085011-41085095)
chr7 (60-141)||(39878642-39878723)
chr7 (53-141)||(22491711-22491799)
chr7 (53-141)||(3765693-3765781)
chr7 (54-141)||(29272773-29272860)
chr7 (53-141)||(33055485-33055573)
chr7 (10-57)||(41084953-41085000)
chr7 (63-122)||(41816285-41816344)
chr7 (53-122)||(31011607-31011675)
chr7 (64-120)||(45225718-45225774)
chr7 (63-122)||(45024701-45024760)
chr7 (63-122)||(48259147-48259206)
chr7 (53-141)||(45223647-45223736)
chr7 (52-122)||(7345121-7345190)
[»] chr4 (18 HSPs)
chr4 (60-141)||(36119529-36119610)
chr4 (53-141)||(48706909-48706997)
chr4 (53-122)||(10310408-10310477)
chr4 (64-122)||(23544135-23544193)
chr4 (74-140)||(46307362-46307428)
chr4 (64-141)||(29696422-29696499)
chr4 (53-141)||(50303490-50303578)
chr4 (53-123)||(4729349-4729419)
chr4 (53-122)||(48035434-48035503)
chr4 (53-141)||(50302216-50302304)
chr4 (53-141)||(54681835-54681923)
chr4 (52-119)||(523358-523424)
chr4 (64-122)||(55961266-55961324)
chr4 (52-116)||(7138774-7138838)
chr4 (53-106)||(54801695-54801748)
chr4 (63-141)||(31518400-31518478)
chr4 (53-122)||(5385763-5385831)
chr4 (53-122)||(24064013-24064081)
[»] chr6 (8 HSPs)
chr6 (53-141)||(24167235-24167323)
chr6 (53-141)||(28482682-28482770)
chr6 (53-141)||(29795097-29795185)
chr6 (53-122)||(34516338-34516407)
chr6 (64-141)||(6271719-6271796)
chr6 (56-95)||(13201476-13201515)
chr6 (52-95)||(33858917-33858960)
chr6 (10-50)||(24167341-24167381)
[»] chr2 (7 HSPs)
chr2 (53-122)||(29078403-29078472)
chr2 (53-141)||(13481455-13481543)
chr2 (52-141)||(31642492-31642581)
chr2 (52-141)||(6191822-6191911)
chr2 (53-141)||(3601805-3601893)
chr2 (64-141)||(13039555-13039632)
chr2 (52-120)||(925728-925796)
[»] scaffold0294 (1 HSPs)
scaffold0294 (53-141)||(2135-2223)
[»] chr8 (13 HSPs)
chr8 (53-140)||(36265855-36265942)
chr8 (53-122)||(39566058-39566127)
chr8 (53-122)||(16220765-16220834)
chr8 (52-119)||(37810165-37810232)
chr8 (53-122)||(40463912-40463980)
chr8 (63-127)||(40917888-40917952)
chr8 (65-122)||(3460772-3460829)
chr8 (53-122)||(30203261-30203330)
chr8 (63-141)||(41313032-41313110)
chr8 (53-122)||(26724707-26724776)
chr8 (54-107)||(8051584-8051637)
chr8 (74-118)||(13637705-13637748)
chr8 (74-118)||(13738118-13738161)
[»] chr3 (11 HSPs)
chr3 (53-131)||(30675663-30675741)
chr3 (53-141)||(10723681-10723769)
chr3 (63-122)||(9020638-9020697)
chr3 (52-141)||(7330889-7330978)
chr3 (52-141)||(28850032-28850121)
chr3 (52-120)||(45774580-45774648)
chr3 (63-122)||(31543490-31543549)
chr3 (63-122)||(34706427-34706486)
chr3 (69-119)||(29077386-29077435)
chr3 (52-97)||(7269620-7269665)
chr3 (53-122)||(34721013-34721082)
[»] scaffold0392 (1 HSPs)
scaffold0392 (53-141)||(845-933)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 19555296 - 19555208
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  19555296 gaaagtaagaagattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagacataaatttagtaattgac 19555208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 43229145 - 43229292
Alignment:
Q  10 aagaaaatgaaaggaaagaatgagatgggaaagatt-gtctagg---------------gaaagtaagaggattgttttggttgtttggtataaaagaaa 93  Q
    |||||||||||||||||||||||||||||||||||| |||||||               |||||||||||||||||||| |||||||||||||| |||||    
T  43229145 aagaaaatgaaaggaaagaatgagatgggaaagatttgtctaggaaaagaagaagagtagaaagtaagaggattgttttagttgtttggtataagagaaa 43229244  T
Q  94 gtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||||||    
T  43229245 gtggaatagaaagttgaaggaaacaaagacctaaatttagtaattgac 43229292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 20654696 - 20654763
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaa 119  Q
    ||||||| |||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  20654696 ggaaagtgagaggattgttttggttgtttggtttaagagaaaatggattagaaagttggaggaaagaa 20654763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 39144457 - 39144543
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattg 139  Q
    ||||||||  |||||||||||||||||||||| |||||||||||||||||||| ||  |||||||||||| | | ||||| ||||||    
T  39144457 gaaagtaaagggattgttttggttgtttggtacaaaagaaagtggaatagaaaattaaaggaaagaaagatccatatttattaattg 39144543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 23153630 - 23153698
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| ||| |||||||||||||||||||||||||||||||| |||||||  ||| |||||||||||||    
T  23153630 gaaagtgagatgattgttttggttgtttggtataaaagaaagt-gaatagattgttagaggaaagaaaga 23153698  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 26108582 - 26108650
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaa 120  Q
    ||||||||||||||||  |||||||||||||||||| ||||||||||  |||||||   ||||||||||    
T  26108582 ggaaagtaagaggattaatttggttgtttggtataagagaaagtggagaagaaagtgaaaggaaagaaa 26108650  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 43229307 - 43229347
Alignment:
Q  240 tagcggtgaattattttaaagaagaagttagaggagaaatg 280  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  43229307 tagcggtgaattattttaaagaagaagttagaggtgaaatg 43229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 19555354 - 19555314
Alignment:
Q  10 aagaaaatgaaaggaaagaatgagatgggaaagattgtcta 50  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  19555354 aagaaaatgaaaggaaagaatgagatatgaaagattgtcta 19555314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 4921543 - 4921484
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    ||||||||||||||||||||||| |||||||||  | || ||||||  ||||||||||||    
T  4921543 ggattgttttggttgtttggtattaaagaaagtaaagtaaaaagttaaaggaaagaaaga 4921484  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 41697349 - 41697406
Alignment:
Q  65 attgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    ||||||||||||||||||||| |||||||||  | || ||||||  ||||||||||||    
T  41697349 attgttttggttgtttggtattaaagaaagtaaagtaaaaagttaaaggaaagaaaga 41697406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 14592152 - 14592065
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattga 140  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14592152 gaaagtaagcggattgttttggttgtttggtacaagagaaagtggaatagaaagttggaggaaagaaagacctaaatttagtaattga 14592065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 911154 - 911299
Alignment:
Q  10 aagaaaatgaaaggaaagaatgagatgggaaagattgtctagggaaag---------------taagaggattgttttggttgtttggtataaaagaaag 94  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||               |||||||||||||||||||||||| |||||||||||     
T  911154 aagaaaatgaaaggaaagaatgagataggaaagattgtctaaggaaagaagaagagtaagaagtaagaggattgttttggttgtttgatataaaagaaaa 911253  T
Q  95 tggaatagaaagttggaggaaagaaagacctaaatttaataattga 140  Q
    || |||| |||||||||| |||| |||||||||||||| |||||||    
T  911254 tgaaataaaaagttggagaaaaggaagacctaaatttagtaattga 911299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 35950021 - 35950108
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    ||||||||| |||||||||||||||||||||| || |||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  35950021 gaaagtaag-ggattgttttggttgtttggtacaagagaatgtggaatagaaagttggagaaaagaaagaccaaaatttagtaattgac 35950108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 1047877 - 1047940
Alignment:
Q  59 aagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||    
T  1047877 aagaggattgttttagttgtttggtacaagagaaagtggaatagaaagttggaagaaagaaaga 1047940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 34079913 - 34079991
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    ||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||| | | | ||||| ||||||||    
T  34079913 ggattgtcttggttgtttggtataaaagaaaatggaataggaagttgaaggaaagaaatatccatatttattaattgac 34079991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 46599075 - 46599163
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||||||||||| || |||||||||| || ||||||| |||||||||||  |||||||||| || |||  || ||||||||||    
T  46599075 gaaagtaagaggattgttatgattgtttggtacaagagaaagtagaatagaaagtaagaggaaagaatgatctatgttcaataattgac 46599163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 1049058 - 1048981
Alignment:
Q  64 gattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    ||||||| ||||||||||||| || ||||||| |||||||||||  ||||||||| ||| |||  |||| ||||||||    
T  1049058 gattgttatggttgtttggtagaagagaaagtagaatagaaagtaagaggaaagatagatctatgtttattaattgac 1048981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 911391 - 911431
Alignment:
Q  240 tagcggtgaattattttaaagaagaagttagaggagaaatg 280  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  911391 tagcggttaattattttaaagaagaagttagaggtgaaatg 911431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 8249001 - 8249060
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    ||||||||||||||||||||| ||| | ||||||||   |||| ||||||||||||||||    
T  8249001 ggattgttttggttgtttggtttaataaaaagtggatcggaaaattggaggaaagaaaga 8249060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 46101965 - 46101922
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagt 95  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||    
T  46101965 ggaaagtaagatgattgatttggttgtttggtataagagaaagt 46101922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 9239518 - 9239473
Alignment:
Q  54 aaagtaagaggattgttttggttgtttggtataaaagaaagtggaa 99  Q
    ||||| ||| |||| ||||||||||||||||||| |||||||||||    
T  9239518 aaagtgagaagattattttggttgtttggtataagagaaagtggaa 9239473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 51192708 - 51192777
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttg---gtataaaagaaagtggaatagaaagttggaggaaagaa 119  Q
    ||||||||||| |||| || ||||||||||   |||||||||||||| ||||||||||| | |||||||||    
T  51192708 ggaaagtaagaagatttttgtggttgtttggtagtataaaagaaagt-gaatagaaagtggaaggaaagaa 51192777  T

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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 41085011 - 41085095
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataat 137  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  41085011 gaaagtaagaggattattttggttgtttggtataagagaaagtggaatagaaagttggaggaaagaaagacttaaatttagtaat 41085095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 39878642 - 39878723
Alignment:
Q  60 agaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||  || ||||| ||||||||    
T  39878642 agaggattgttttggttgtttggtataaaagaaaatggaatagaaagttgaaggaaagaaagatatatatttattaattgac 39878723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 22491799 - 22491711
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||||||||||||||||||||||||| || |||||||||| |||||||||  |||||||||||| |||||| || ||||||||    
T  22491799 gaaagtaagaggattgttttggttgtttggtacaagagaaagtggagtagaaagtttaaggaaagaaagatctaaatgtagtaattgac 22491711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 3765781 - 3765693
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||| || |||||||||||||| |||||| ||||| ||  ||||||||||| |||||||||||||||| |||||||| |||||    
T  3765781 gaaagtaagatgaatgttttggttgtttagtataagagaaaatgagatagaaagttgaaggaaagaaagacctacatttaatagttgac 3765693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 29272773 - 29272860
Alignment:
Q  54 aaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||| |||||||||||||||||||||||||| || ||||||| ||||| |||||||  | ||||||||| ||||||||| ||||||||    
T  29272773 aaagcaagaggattgttttggttgtttggtacaagagaaagtagaataaaaagttgatgaaaagaaagatctaaatttagtaattgac 29272860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 33055573 - 33055485
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||| ||| ||||||||| |||||||||||||| |||||||| | ||||| |||  || ||||||||| ||| ||||||||||||||    
T  33055573 gaaagtgagatgattgttttagttgtttggtataagagaaagtgaagtagaatgttaaagaaaagaaagatctatatttaataattgac 33055485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 41084953 - 41085000
Alignment:
Q  10 aagaaaatgaaaggaaagaatgagatgggaaagattgtctagggaaag 57  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  41084953 aagaaaatgaaaggaaagaatgagataagaaagattgtctagggaaag 41085000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 41816344 - 41816285
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    ||||||||||||||||||||| ||| |||||||||| | |||| ||||||||||||||||    
T  41816344 ggattgttttggttgtttggtttaatagaaagtggattggaaaattggaggaaagaaaga 41816285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 31011607 - 31011675
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| ||| |||||||||||| ||||||||||||||||||| |||||||  ||| |||||||||||||    
T  31011607 gaaagtgagatgattgttttggtggtttggtataaaagaaagt-gaatagattgttagaggaaagaaaga 31011675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 45225774 - 45225718
Alignment:
Q  64 gattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaa 120  Q
    |||||||||||||||||||| ||| |||||||||| |||||| ||| ||||||||||    
T  45225774 gattgttttggttgtttggtttaatagaaagtggattagaaaattgaaggaaagaaa 45225718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 45024760 - 45024701
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    ||||||||||||||||||||| ||| ||||| |||| | |||| ||||||||||||||||    
T  45024760 ggattgttttggttgtttggtttaatagaaattggattggaaaattggaggaaagaaaga 45024701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 48259147 - 48259206
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    ||||||||||||||||||||| ||| |||||||||| |  ||| ||||||||||||||||    
T  48259147 ggattgttttggttgtttggtttaatagaaagtggattgaaaaattggaggaaagaaaga 48259206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 45223647 - 45223736
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagaccta-aatttaataattgac 141  Q
    |||||| ||||||||||||| |||||||||||||| |||||||| | || || |||| ||| |||||| | ||| | |||||||||||||    
T  45223647 gaaagtgagaggattgttttagttgtttggtataagagaaagtgaagtaaaatgttgtagggaagaaaaatctatattttaataattgac 45223736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 7345190 - 7345121
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    ||||||||||| |||| |||||||||||||||||||| |||| | ||  ||||||| | ||||||||||||    
T  7345190 ggaaagtaagatgattattttggttgtttggtataaatgaaaat-gataagaaagtggaaggaaagaaaga 7345121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 36119610 - 36119529
Alignment:
Q  60 agaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  || ||||| ||||||||    
T  36119610 agaggattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagatatatatttattaattgac 36119529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 48706909 - 48706997
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||| || ||||||||    
T  48706909 gaaagtgagaggattgttttggttgtttggtacaagagaaagtggaatagaaagttggaggaaagaaatgcctaaatgtagtaattgac 48706997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 10310477 - 10310408
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10310477 gaaagtgaggggattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaaga 10310408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 23544135 - 23544193
Alignment:
Q  64 gattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23544135 gattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaaga 23544193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 46307362 - 46307428
Alignment:
Q  74 gttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattga 140  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| |||||||    
T  46307362 gttgtttggtataagagaaagttgaatagaaagttgaaggaaagaaagacctaaatttagtaattga 46307428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 29696499 - 29696422
Alignment:
Q  64 gattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||||||||||||||| |||||||||| ||||||||| |  |||||||||||| ||| ||||||||||||||    
T  29696499 gattgttttggttgtttggtatgaaagaaagtgaaatagaaaggttaaggaaagaaagatctatatttaataattgac 29696422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 50303578 - 50303490
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||| || |||||||||||||||||||||||||| ||||||  ||||||||| |  | |||||||||| ||| ||||||||||||||    
T  50303578 gaaagtgaggggattgttttggttgtttggtataaaggaaagtaaaatagaaaggttaaagaaagaaagatctatatttaataattgac 50303490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 4729419 - 4729349
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagac 123  Q
    |||||| ||| ||||||||||||||||||||| || ||||| || ||||||||||||||| ||||||||||    
T  4729419 gaaagtgagatgattgttttggttgtttggtacaagagaaattgaaatagaaagttggagaaaagaaagac 4729349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 48035434 - 48035503
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| || ||||| |||||||||||| |||||| |||||||||| | |||||||||||||||||||||    
T  48035434 gaaagtgaggggattattttggttgtttcgtataagagaaagtggattggaaagttggaggaaagaaaga 48035503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 50302304 - 50302216
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||| || |||||||||||||||||||||||||| ||||||  ||||||||| |  | |||||||| | ||| ||||||||||||||    
T  50302304 gaaagtgaggggattgttttggttgtttggtataaaggaaagtaaaatagaaaggttaaagaaagaaatatctatatttaataattgac 50302216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 54681835 - 54681923
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||| || |||||||||| |||||||||||||| ||||||||||||||||| ||| ||||| |||| | ||| || || ||||||||    
T  54681835 gaaagtgaggggattgttttagttgtttggtataatagaaagtggaatagaaaattgaaggaaggaaaaatctatatatagtaattgac 54681923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 523358 - 523424
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaa 119  Q
    ||||||||||| |||| || |||||||||||||||||||||||| ||||||||||| | |||||||||    
T  523358 ggaaagtaagaagatttttgtggttgtttggtataaaagaaagt-gaatagaaagtggaaggaaagaa 523424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 55961324 - 55961266
Alignment:
Q  64 gattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    ||||||||||||| |||||| ||| |||||||||| |||||| ||||||||||||||||    
T  55961324 gattgttttggttatttggtttaatagaaagtggattagaaaattggaggaaagaaaga 55961266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 7138774 - 7138838
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaa 116  Q
    ||||||| |||||||||||||| ||||||||| ||| |||||||||| |||| |||| |||||||    
T  7138774 ggaaagtgagaggattgttttgattgtttggtttaagagaaagtggattagacagtttgaggaaa 7138838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 54801695 - 54801748
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaag 106  Q
    |||||||||||||||||| || |||||||||| || ||||||| ||||||||||    
T  54801695 gaaagtaagaggattgttatgattgtttggtacaagagaaagtagaatagaaag 54801748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 31518400 - 31518478
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||  |||||||||||||||| | |||||||| ||||||||   |||||||||||| ||| ||||  ||||||||    
T  31518400 ggattgtcatggttgtttggtataagataaagtggattagaaagtgaaaggaaagaaagatctatattttttaattgac 31518478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 5385763 - 5385831
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| ||| ||||||| ||||||||||||| || ||||||| ||| |||||||  |||||||||||||    
T  5385763 gaaagtgagatgattgttatggttgtttggtagaagagaaagtagaa-agaaagtaagaggaaagaaaga 5385831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 24064081 - 24064013
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| ||| |||||||||| | ||||||||||||||||||| ||||| |  ||| |||||||||||||    
T  24064081 gaaagtgagatgattgttttgatggtttggtataaaagaaagt-gaataaattgttagaggaaagaaaga 24064013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 24167323 - 24167235
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||| |||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||    
T  24167323 gaaagtaagatgattattttggttgtttggtacaagagaaactggaatagaaagttggaggaaagaaagacataaatttagtaattgac 24167235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 28482770 - 28482682
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||| ||||||||||||| ||||||| || |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  28482770 gaaagtaagaagattgttttggttatttggtacaagagaaagtgaaatagaaagatggaggaaagaaagatctaaatttaataattgac 28482682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 29795185 - 29795097
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||| ||||||||||||| ||||||| || |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  29795185 gaaagtaagaagattgttttggttatttggtacaagagaaagtgaaatagaaagatggaggaaagaaagatctaaatttaataattgac 29795097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 34516407 - 34516338
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||    
T  34516407 gaaagtgagaggattgttttggttgtttggtataaaagaaagtggaatggaaagttaaaggaaagaaaga 34516338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 6271796 - 6271719
Alignment:
Q  64 gattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    ||||||||| |||||||||| |||||||||||| | |||||| ||| |||||||||||| ||| ||||| ||||||||    
T  6271796 gattgttttagttgtttggtttaaaagaaagtgaagtagaaaattgaaggaaagaaagatctatatttattaattgac 6271719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 13201515 - 13201476
Alignment:
Q  56 agtaagaggattgttttggttgtttggtataaaagaaagt 95  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  13201515 agtaagaggattgttttgattgtttggtataaaagaaagt 13201476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 33858960 - 33858917
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagt 95  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  33858960 ggaaagtaagaggattgatttggttgtttggtataagagaaagt 33858917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 24167381 - 24167341
Alignment:
Q  10 aagaaaatgaaaggaaagaatgagatgggaaagattgtcta 50  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  24167381 aagaaaatgaaaggaaagaatgagaaaggaaagattgtcta 24167341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 29078403 - 29078472
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29078403 gaaagtgaggggattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaaga 29078472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 13481455 - 13481543
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||| ||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| ||| ||||  ||||||||    
T  13481455 gaaagtgagaggattgttttggttgtttggtacaagggaaagtggaatagaaagttggaggaaagaaagatctatattttctaattgac 13481543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 31642581 - 31642492
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    ||||||| | ||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||||| ||| ||||| | ||||||    
T  31642581 ggaaagtgaaaggattgttttggttgtttggtataaaagaaagtaaagtagaaagttgaaggaaagaaagatctatatttattgattgac 31642492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 6191822 - 6191911
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    ||||||| |||||||||||||||||||||||| ||| |||||||||| || |||||| |||||||||| || |||  |||| ||||||||    
T  6191822 ggaaagtgagaggattgttttggttgtttggtttaagagaaagtggattaaaaagtttgaggaaagaatgatctatttttagtaattgac 6191911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 3601805 - 3601893
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||| |||||||||||||||||||||| || ||||||||||||| |||||| ||| |||||||||| || || ||||  ||||||||    
T  3601805 gaaagtgagaggattgttttggttgtttgatacaaaagaaagtggagtagaaaattgaaggaaagaaaaacatacatttggtaattgac 3601893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 13039555 - 13039632
Alignment:
Q  64 gattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||||| |||||||||| || | ||| ||||||| ||||||||| ||||||||  ||||||| |||||||||||    
T  13039555 gattgttttgtttgtttggtacaagaaaaaatggaataaaaagttggaagaaagaaaatcctaaatgtaataattgac 13039632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 925796 - 925728
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaa 120  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||  |||||||   ||||||||||    
T  925796 ggaaagtaagaggattgatttggttgtttggtataagagaaagtagagaagaaagtgaaaggaaagaaa 925728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 2135 - 2223
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||| ||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| ||| ||||  ||||||||    
T  2135 gaaagtgagaggattgttttggttgtttggtacaagggaaagtggaatagaaagttggaggaaagaaagatctacattttgtaattgac 2223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 36265942 - 36265855
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattga 140  Q
    |||||| |||||||| ||| ||||||||| || || ||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  36265942 gaaagtgagaggattatttgggttgtttgatacaagagaaagtgggatagaaagttggaggaaagaaagacctacatttaataattga 36265855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 39566127 - 39566058
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| ||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  39566127 gaaagtgagaggattgttttggttgtttggtacacgagaaagtggaatagaaagttggaggaaagaaaga 39566058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 16220834 - 16220765
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| | ||||||||||||| |||||||||||| ||||||||||||||||||||  ||||||||||||    
T  16220834 gaaagtgaaaggattgttttggatgtttggtataagagaaagtggaatagaaagttaaaggaaagaaaga 16220765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 37810165 - 37810232
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaa 119  Q
    ||||||| |||||||||||||||||||||||| ||| ||||||| || ||||||||| ||||||||||    
T  37810165 ggaaagtgagaggattgttttggttgtttggtttaagagaaagtcgattagaaagtttgaggaaagaa 37810232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 40463912 - 40463980
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| ||| |||||||||||||||||||||||||||||||| |||||||  ||| |||||||||||||    
T  40463912 gaaagtgagatgattgttttggttgtttggtataaaagaaagt-gaatagattgttagaggaaagaaaga 40463980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 40917888 - 40917952
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaa 127  Q
    ||||||||||||||||||||| ||| |||||||||| | |||| |||||||||||||||| ||||    
T  40917888 ggattgttttggttgtttggtttaatagaaagtggattggaaaattggaggaaagaaagatctaa 40917952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 3460772 - 3460829
Alignment:
Q  65 attgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| |||||||||||||||| |||||||||| ||||||||  |||||||||||||    
T  3460772 attgttatggttgtttggtataagagaaagtggattagaaagtgagaggaaagaaaga 3460829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 30203330 - 30203261
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| ||| ||||||| ||||||||||||| || ||||||| |||||||||||  |||||||||||||    
T  30203330 gaaagtgagatgattgttatggttgtttggtaaaagagaaagtagaatagaaagtaagaggaaagaaaga 30203261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 41313110 - 41313032
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||||| |||||||||||||||| |||||||| | ||||||||   |||||||||||| ||| ||||  ||||||||    
T  41313110 ggattgttatggttgtttggtataagagaaagtgaattagaaagtgaaaggaaagaaagatctatattttttaattgac 41313032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 26724776 - 26724707
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||| ||| ||||||| ||||||||||||| || ||||||| |||||||||||   ||||||||||||    
T  26724776 gaaagtgagatgattgttatggttgtttggtaaaagagaaagtagaatagaaagtaaaaggaaagaaaga 26724707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 8051637 - 8051584
Alignment:
Q  54 aaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagt 107  Q
    ||||||||| ||||| ||||||||||||||| || ||||||||||  |||||||    
T  8051637 aaagtaagaagattgatttggttgtttggtacaagagaaagtggagaagaaagt 8051584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 13637748 - 13637705
Alignment:
Q  74 gttgtttggtataaaagaaagtggaatagaaagttggaggaaaga 118  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  13637748 gttgtttggtatcaaagaaagtggaa-agaaagttgaaggaaaga 13637705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 13738161 - 13738118
Alignment:
Q  74 gttgtttggtataaaagaaagtggaatagaaagttggaggaaaga 118  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  13738161 gttgtttggtatcaaagaaagtggaa-agaaagttgaaggaaaga 13738118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 30675663 - 30675741
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaattt 131  Q
    |||||| ||||||||||||||||||||||||| ||  ||||||||||| ||||||||||||||||||||| ||| ||||    
T  30675663 gaaagtgagaggattgttttggttgtttggtacaagggaaagtggaatggaaagttggaggaaagaaagatctacattt 30675741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 10723769 - 10723681
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||| || ||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||| ||| || || ||||||||    
T  10723769 gaaagtgaggggattattttagttgtttggtataatagaaagtggaatagaaagttgaaggaaagaaagatctatatatagtaattgac 10723681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 9020697 - 9020638
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    ||||||||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||    
T  9020697 ggattgttttggttgtttggtttaatagaaagtggattagaaaattggaggaaagaaaga 9020638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 7330978 - 7330889
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    ||||||| |||||||||||||| ||||||||| ||| |||||||||| ||||||||| || ||||||| || |||  |||| ||||||||    
T  7330978 ggaaagtgagaggattgttttgattgtttggtttaagagaaagtggattagaaagtttgaagaaagaatgatctatttttagtaattgac 7330889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 28850121 - 28850032
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    ||||||| ||| |||||||||||||||||||| ||| |||||||||| | ||||||| |||||||||| || |||  |||| ||||||||    
T  28850121 ggaaagtgagatgattgttttggttgtttggtttaagagaaagtggattcgaaagtttgaggaaagaatgatctatttttagtaattgac 28850032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 45774580 - 45774648
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaa 120  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||  |||||||   ||||||||||    
T  45774580 ggaaagtaagaggattgatttggttgtttggtataagagaaagtagagaagaaagtgaaaggaaagaaa 45774648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 31543549 - 31543490
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||||| |||||||||||||||| |||||||||  ||||||||   ||||||||||||    
T  31543549 ggattgttatggttgtttggtataagagaaagtgggttagaaagtgaaaggaaagaaaga 31543490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 34706427 - 34706486
Alignment:
Q  63 ggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||||||| |||||||||| ||| ||||| |||| |||||  ||||||||||||||||    
T  34706427 ggattgttttagttgtttggtttaatagaaaatggattagaacattggaggaaagaaaga 34706486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 29077386 - 29077435
Alignment:
Q  69 ttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaa 119  Q
    ||||||||||||||||||| ||||||| ||||||||||| | |||||||||    
T  29077386 ttttggttgtttggtataagagaaagt-gaatagaaagtggaaggaaagaa 29077435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 7269665 - 7269620
Alignment:
Q  52 ggaaagtaagaggattgttttggttgtttggtataaaagaaagtgg 97  Q
    ||||||||||| ||||| ||||||||||||||| || |||||||||    
T  7269665 ggaaagtaagaagattgatttggttgtttggtacaagagaaagtgg 7269620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 34721082 - 34721013
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaaga 122  Q
    |||||||||| ||||||| || ||||||| || || |||||||  ||||||||||  |||||||||||||    
T  34721082 gaaagtaagatgattgttatgattgtttgatacaagagaaagtataatagaaagtaagaggaaagaaaga 34721013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0392 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 933 - 845
Alignment:
Q  53 gaaagtaagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttggaggaaagaaagacctaaatttaataattgac 141  Q
    |||||| ||||||||||||| |||||||| ||||| |||||||| | ||||| |||| |||||||||||| ||| |||||||| |||||    
T  933 gaaagtgagaggattgttttagttgtttgatataagagaaagtgaagtagaatgttgaaggaaagaaagatctatatttaatagttgac 845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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