View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21030_low_12 (Length: 255)

Name: NF21030_low_12
Description: NF21030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21030_low_12
NF21030_low_12
[»] chr5 (15 HSPs)
chr5 (18-255)||(9838419-9838656)
chr5 (32-250)||(10593654-10593872)
chr5 (22-255)||(10765206-10765439)
chr5 (22-123)||(11050095-11050196)
chr5 (22-200)||(19608011-19608189)
chr5 (22-127)||(10598974-10599079)
chr5 (22-83)||(10749278-10749339)
chr5 (18-95)||(10556801-10556878)
chr5 (26-196)||(10602642-10602812)
chr5 (18-129)||(10590644-10590755)
chr5 (26-61)||(10742987-10743022)
chr5 (22-72)||(10719172-10719222)
chr5 (26-197)||(7190891-7191062)
chr5 (22-61)||(10562912-10562951)
chr5 (22-63)||(10654485-10654526)
[»] chr6 (4 HSPs)
chr6 (159-255)||(12946663-12946759)
chr6 (22-63)||(12897450-12897491)
chr6 (22-63)||(12905071-12905112)
chr6 (22-63)||(12946526-12946567)
[»] chr3 (1 HSPs)
chr3 (45-126)||(31469379-31469460)
[»] chr2 (1 HSPs)
chr2 (22-63)||(17925689-17925730)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 9838656 - 9838419
Alignment:
Q  18 caactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9838656 caactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatggatccatgtcaccttacattggc 9838557  T
Q  118 aatctctctcgtataagaaacatcaaccttaaaaacaataccttctttggaaaaattccacaggaactcggtcggttgttacatctgcatcaacttttgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838556 aatctctctcgtataagaaacatcaaccttaaaaacaataccttctttggaaaaattccacaggaactcggtcggttgttacatctgcatcaacttttgc 9838457  T
Q  218 tcgacaataactcgttttcaggagaaattcctataaac 255  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9838456 tcgacaataacttgttttcaggagaaattcctataaac 9838419  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 10593654 - 10593872
Alignment:
Q  32 tcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggcaatctctctcgtat 131  Q
    ||||||||||  ||| ||||||||||||||||||||| |  ||||||||||||||||||||||| |  || || ||||| |||||||||||| || ||||    
T  10593654 tcacatgcaattccaagcatcaaagagttacaaaattaatgttacaaggatacaagttgcatggatatatatctccttatattggcaatctcacttgtat 10593753  T
Q  132 aagaaacatcaaccttaaaaacaataccttctttggaaaaattccacaggaactcggtcggttgttacatctgcatcaacttttgctcgacaataactcg 231  Q
    ||||||| | |||||| ||| ||||   |||||||||||||||||||||||| | || |  ||||||||  ||||   |||||| |||   |||||||||    
T  10593754 aagaaaccttaaccttgaaagcaatggtttctttggaaaaattccacaggaattggggcaattgttacaattgcagggactttttctcagtaataactcg 10593853  T
Q  232 ttttcaggagaaattccta 250  Q
    ||| |||||||||| ||||    
T  10593854 tttacaggagaaatcccta 10593872  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 10765439 - 10765206
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggcaatc 121  Q
    ||||||||||||||||||| || |||||||||||| |||||| | |||||| ||  ||||||  |||| ||||| ||  | || || ||  |||| ||||    
T  10765439 tggcatggaatcacatgcagcctcatgcatcaaagggttacagagttgaacctagcaggatatcagttacatggatctttatctccctatcttggtaatc 10765340  T
Q  122 tctctcgtataagaaacatcaaccttaaaaacaataccttctttggaaaaattccacaggaactcggtcggttgttacatctgcatcaacttttgctcga 221  Q
    || ||  | | | |||  |||||||| |||||||||  || | |||| |||||||||||||  |||||| |||| |||| ||||| |||||||  |||      
T  10765339 tcacttttctgataaatctcaaccttcaaaacaatagtttttctggagaaattccacaggagttcggtcagttgctacaactgcaacaactttatctcct 10765240  T
Q  222 caataactcgttttcaggagaaattcctataaac 255  Q
     |||||||||||| ||||||||||||||||||||    
T  10765239 taataactcgtttacaggagaaattcctataaac 10765206  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 11050196 - 11050095
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggcaatc 121  Q
    ||||||||||||||||||| || ||||||||||||||||||||| |||||| || |||||||  |||||||||| || || ||||| ||  |||||||||    
T  11050196 tggcatggaatcacatgcagcctcatgcatcaaagagttacaaagttgaacctagaaggatatcagttgcatggatcaatatcaccctatgttggcaatc 11050097  T
Q  122 tc 123  Q
    ||    
T  11050096 tc 11050095  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 19608189 - 19608011
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggcaatc 121  Q
    ||||||||||||||||||| |||||||||||||||||||| | |||||||| ||||||||||  | |||||||| || || ||  || | ||||| ||||    
T  19608189 tggcatggaatcacatgcagccccatgcatcaaagagttatagaattgaacctacaaggatatgaattgcatggatcaatatctactcatattggtaatc 19608090  T
Q  122 tctctcgtataagaaacatcaaccttaaaaacaataccttctttggaaaaattccacaggaactcggtcggttgttaca 200  Q
    |||||  | | |||||| | ||||||  ||| ||||  ||||||||||| || ||| | ||||| ||  ||||||||||    
T  19608089 tctcttttctcagaaacttaaaccttgcaaagaataatttctttggaaacatcccaaatgaacttggaaggttgttaca 19608011  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 10598974 - 10599079
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggcaatc 121  Q
    ||||||||||||| |||||| |||| |||||||||||||||||| ||||  || | | | |||||||||||||| ||||| || || || ||||||||||    
T  10598974 tggcatggaatcatatgcaatcccaagcatcaaagagttacaaagttgaggttgccaagttacaagttgcatggatccatatctccatatattggcaatc 10599073  T
Q  122 tctctc 127  Q
    ||||||    
T  10599074 tctctc 10599079  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 10749339 - 10749278
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggata 83  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||    
T  10749339 tggcatggaatcacatgcaaacccatgcatgaaagagttacaaagttgaacttagaaggata 10749278  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 10556801 - 10556878
Alignment:
Q  18 caactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgg 95  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||  | ||||| ||||  ||||| |||||||||||    
T  10556801 caactggtatggaatcacatgcaacaccatgcatcaaagagttactgagttgaagttacctggatataagttgcatgg 10556878  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 10602642 - 10602812
Alignment:
Q  26 atggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggcaatctctc 125  Q
    ||||||||| ||||   |||| |||||||||||||||||| ||||| || ||||| ||||| |||||||| || || || || || ||||||||||||||    
T  10602642 atggaatcatatgcggtcccaagcatcaaagagttacaaacttgaagttgcaagggtacaaattgcatggatcaatatctccgtatattggcaatctctc 10602741  T
Q  126 tcgtataagaaacatcaaccttaaaaacaataccttctttggaaaaattccacaggaactcggtcggttgt 196  Q
    ||  || ||| || ||||||||  ||| || | ||||  |||||| |||||||| ||| | ||||| ||||    
T  10602742 tcaaatgagatacctcaaccttggaaataacagcttcaatggaaacattccacaagaattgggtcgtttgt 10602812  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 10590755 - 10590644
Alignment:
Q  18 caactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggc 117  Q
    ||||||| ||||||||| |||||  |||| ||||||||||||||| || |||||  |   |||||||||||||||||| ||||| || || || |||||     
T  10590755 caactggaatggaatcatatgcagtcccaagcatcaaagagttaccaagttgaagctgtcaggatacaagttgcatggatccatatctccatatattggt 10590656  T
Q  118 aatctctctcgt 129  Q
    ||||| ||||||    
T  10590655 aatctttctcgt 10590644  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 10743022 - 10742987
Alignment:
Q  26 atggaatcacatgcaaccccatgcatcaaagagtta 61  Q
    ||||||||||||||||||||||||||||||||||||    
T  10743022 atggaatcacatgcaaccccatgcatcaaagagtta 10742987  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 10719222 - 10719172
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaac 72  Q
    ||||||||||||||||||| |||||||||| ||||||||||| | ||||||    
T  10719222 tggcatggaatcacatgcagccccatgcatgaaagagttacagagttgaac 10719172  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 7190891 - 7191062
Alignment:
Q  26 atggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggcaatctctc 125  Q
    |||||||||||||||  |||||||||||||||||| |  | || |||||  |||||||  || ||||||| |  || || ||  |  |||||||||||||    
T  7190891 atggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatctctc 7190990  T
Q  126 tcgtataagaaacatcaaccttaaaaacaataccttctttggaaaaattccacaggaactcggtcggttgtt 197  Q
    |  | | |||||| ||||||||  | ||||||  ||||| |||||||| |||||| ||||||||| ||||||    
T  7190991 ttttttgagaaacctcaaccttgcacacaatagtttcttcggaaaaatcccacagaaactcggtcagttgtt 7191062  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 10562912 - 10562951
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagtta 61  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  10562912 tggcagggaatcacttgcaaccccatgcatcaaagagtta 10562951  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 10654526 - 10654485
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagttaca 63  Q
    ||||||||||| ||||| || |||||||||||||||||||||    
T  10654526 tggcatggaattacatgtaatcccatgcatcaaagagttaca 10654485  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 12946663 - 12946759
Alignment:
Q  159 cttctttggaaaaattccacaggaactcggtcggttgttacatctgcatcaacttttgctcgacaataactcgttttcaggagaaattcctataaac 255  Q
    |||||||||| |||||||||||||  | |||| |||| ||||| |||| |||||||| ||| |||||||||| ||| |||| || ||||||| ||||    
T  12946663 cttctttggagaaattccacaggagttgggtcagttgctacatttgcaacaactttttctcaacaataactcttttgcaggtgagattcctacaaac 12946759  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 12897450 - 12897491
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagttaca 63  Q
    ||||||||||||||||||| |||||||||| || ||||||||    
T  12897450 tggcatggaatcacatgcagccccatgcatgaacgagttaca 12897491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 12905071 - 12905112
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagttaca 63  Q
    ||||||||||||||||||| |||||||||| || ||||||||    
T  12905071 tggcatggaatcacatgcagccccatgcatgaacgagttaca 12905112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 12946526 - 12946567
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagttaca 63  Q
    ||||||||||||||||||| |||||||||| || ||||||||    
T  12946526 tggcatggaatcacatgcagccccatgcatgaacgagttaca 12946567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 31469460 - 31469379
Alignment:
Q  45 catgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggcaatctctct 126  Q
    |||| |||||||||||||| |||||||  || ||||||| ||||||||||| || || ||||||||  |||| |||||||||    
T  31469460 catgaatcaaagagttacagaattgaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctct 31469379  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 17925730 - 17925689
Alignment:
Q  22 tggcatggaatcacatgcaaccccatgcatcaaagagttaca 63  Q
    ||||||||||||||||||| |||||||||| || ||||||||    
T  17925730 tggcatggaatcacatgcagccccatgcatgaacgagttaca 17925689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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