View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21030_low_15 (Length: 234)
Name: NF21030_low_15
Description: NF21030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21030_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38083308 - 38083092
Alignment:
| Q |
1 |
taaacacaaacatatgtcaagtttaacaccaaactttagtaatttattcaagtatcat-gttttaagtaaaagtaaacaaacatgtaaaaataaatacac |
99 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38083308 |
taaacacaaatatatgtcaagtttaacaccaaactttagtaatttattcaagtatcattgttttaagtaaaagtaaacaaacatgtaaaaataaatacac |
38083209 |
T |
|
| Q |
100 |
acatagaatatctaggggttgatgaatgctgcatcagatactcatccaaaaaagatgtggaaatcttcttgctcccgattgaagaagaccttgttggcat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38083208 |
acatagaatatctaggggttgatgaatgctgcatcagatactcatccaaaaaagatgtggaaatcttcttgctcccgattgaagaagaccttgttggcat |
38083109 |
T |
|
| Q |
200 |
gtaatatgtaactatct |
216 |
Q |
| |
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||||||||||| ||||| |
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| T |
38083108 |
gtaatatgtaattatct |
38083092 |
T |
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