View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21030_low_3 (Length: 423)

Name: NF21030_low_3
Description: NF21030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21030_low_3
NF21030_low_3
[»] chr5 (8 HSPs)
chr5 (189-413)||(14810498-14810722)
chr5 (69-165)||(20700255-20700351)
chr5 (68-165)||(14810383-14810480)
chr5 (77-163)||(18587740-18587826)
chr5 (1-71)||(14810269-14810339)
chr5 (1-69)||(20700143-20700210)
chr5 (72-163)||(42563038-42563129)
chr5 (75-145)||(26642640-26642710)
[»] chr4 (3 HSPs)
chr4 (68-162)||(29575398-29575492)
chr4 (1-71)||(29575536-29575606)
chr4 (9-59)||(26000701-26000751)
[»] chr7 (4 HSPs)
chr7 (68-165)||(13010144-13010241)
chr7 (68-164)||(34693139-34693235)
chr7 (1-71)||(13010285-13010355)
chr7 (16-68)||(34693027-34693079)
[»] chr1 (5 HSPs)
chr1 (71-165)||(18656994-18657088)
chr1 (74-165)||(3230660-3230751)
chr1 (1-71)||(18657135-18657205)
chr1 (9-54)||(3230528-3230573)
chr1 (67-143)||(20948609-20948685)
[»] chr3 (2 HSPs)
chr3 (99-161)||(47244846-47244908)
chr3 (123-161)||(47244673-47244711)
[»] chr8 (2 HSPs)
chr8 (10-63)||(913948-914001)
chr8 (76-145)||(11737681-11737750)
[»] chr2 (2 HSPs)
chr2 (76-145)||(9680333-9680402)
chr2 (76-145)||(41687154-41687223)
[»] chr6 (1 HSPs)
chr6 (117-145)||(14835511-14835539)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 189 - 413
Target Start/End: Original strand, 14810498 - 14810722
Alignment:
Q  189 taatgaacatggttggtcccgcatggttcctgcccgatattttttgagttacttttgtttttggaactggcctaccctactctttttcattggcaattaa 288  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14810498 taatgaacatggttggtcccgcatgattcctgcccgatattttttgagttacttttgtttttggcactggcctaccctactctttttcattggcaattaa 14810597  T
Q  289 gaattatcctttttgtttgtactattagcgataacgataccttaaattaatggcttaataatcaagacaagattatattttgtcatgaaccaggccttga 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14810598 gaattatcctttttgtttgtactattagcgataacgataccttaaattaatggcttaataatcaagacaagattatattttgtcatgaaccaagccttga 14810697  T
Q  389 cgaggtaaaatgtttgtgggttcat 413  Q
    |||||||||||||||||||||||||    
T  14810698 cgaggtaaaatgtttgtgggttcat 14810722  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 20700255 - 20700351
Alignment:
Q  69 agaagccttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 165  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20700255 agaagccttatcccatgcttcacgcagtacttttgatgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 20700351  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 14810383 - 14810480
Alignment:
Q  68 gagaagccttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 165  Q
    ||||||||||||| |||||||||| || || |||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  14810383 gagaagccttatctcatgcttcacacaatacttttgatgtaattcttttttgtattgctactattattatgaatgagacaccttaaatttgtttgctt 14810480  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 18587826 - 18587740
Alignment:
Q  77 tatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgc 163  Q
    |||||||| |||||| ||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18587826 tatcccatacttcacacagtacttttgatgtaattcccttttgtattgctactattattatgaatgaatcaccttaaatttgcttgc 18587740  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 14810339 - 14810269
Alignment:
Q  1 aacaactgcaaagtcgttatagtgatcaagtaaggttctacaattttggataattgaaccatactcagaga 71  Q
    ||||||| |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  14810339 aacaactacaaagttgttatagtgatcaagtaaggttctataactttggataattgaaccatactcagaga 14810269  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 20700210 - 20700143
Alignment:
Q  1 aacaactgcaaagtcgttatagtgatcaagtaaggttctacaattttggataattgaaccatactcaga 69  Q
    ||||||| ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||    
T  20700210 aacaactacaaagtcgttatagtgatcaagtaaggttcta-gagtttggataattgaaccatactcaga 20700143  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 42563129 - 42563038
Alignment:
Q  72 agccttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgc 163  Q
    ||||||||||||||||||| | |||| ||||||||||||||||  | ||||||||| ||||| ||||||| ||| ||||||| |||||||||    
T  42563129 agccttatcccatgcttcaggaagtacttttgatgtaatttctcctagtattgctattattactatgaataaaagaccttaagtttgcttgc 42563038  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 26642640 - 26642710
Alignment:
Q  75 cttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaa 145  Q
    |||||||||||||||||||| ||||||||||||||||||    |||||||| |||| |||||| |||||||    
T  26642640 cttatcccatgcttcacgcaatatttttgatgtaatttcaagatgtattgcaactaatattattaatgaaa 26642710  T

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Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 29575492 - 29575398
Alignment:
Q  68 gagaagccttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttg 162  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29575492 gagaagccttatcccatgcttcacgcagtacttttgttgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttg 29575398  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29575536 - 29575606
Alignment:
Q  1 aacaactgcaaagtcgttatagtgatcaagtaaggttctacaattttggataattgaaccatactcagaga 71  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  29575536 aacaactacaaagtcgttatagtgatcaagtaaggttctacagttttggatgattgaaccatactcagaga 29575606  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 26000751 - 26000701
Alignment:
Q  9 caaagtcgttatagtgatcaagtaaggttctacaattttggataattgaac 59  Q
    ||||||| ||| |||||||||||||||||||| ||||||||| ||| ||||    
T  26000751 caaagtctttaaagtgatcaagtaaggttctaaaattttggagaatcgaac 26000701  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 13010241 - 13010144
Alignment:
Q  68 gagaagccttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 165  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13010241 gagaagtcttatcccatgtttcacgcagtacttttgatgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 13010144  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 34693139 - 34693235
Alignment:
Q  68 gagaagccttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgct 164  Q
    ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |||||    
T  34693139 gagaaaccttatcccatgcttcacgcagtacttttgatgtaattcctttttgtatcgttactattattatgaatgaaacaccttaaatttgtttgct 34693235  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 13010285 - 13010355
Alignment:
Q  1 aacaactgcaaagtcgttatagtgatcaagtaaggttctacaattttggataattgaaccatactcagaga 71  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  13010285 aacaactacaaagtcgttatagtgatcaagtaaggttctacaattttggacaatcgaaccatactcagaga 13010355  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 34693079 - 34693027
Alignment:
Q  16 gttatagtgatcaagtaaggttctacaattttggataattgaaccatactcag 68  Q
    ||||||||||||||||||| | |||||||||| |||||| ||| |||||||||    
T  34693079 gttatagtgatcaagtaagatcctacaattttagataatcgaatcatactcag 34693027  T

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Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 18657088 - 18656994
Alignment:
Q  71 aagccttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 165  Q
    |||| ||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18657088 aagcattagcccatgcttcacgcattacttttgatgtaattcctttttgtattgctactattattatgaatgaaacatcttaaatttgcttgctt 18656994  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 3230660 - 3230751
Alignment:
Q  74 ccttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt 165  Q
    ||||||||||||||||||  | || |||||||||||||  || ||||||||||| ||||||||||||||||||| | ||| |||||||||||    
T  3230660 ccttatcccatgcttcacataatacttttgatgtaattctttcttgtattgctaatattattatgaatgaaacatcgtaagtttgcttgctt 3230751  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 18657135 - 18657205
Alignment:
Q  1 aacaactgcaaagtcgttatagtgatcaagtaaggttctacaattttggataattgaaccatactcagaga 71  Q
    ||||||| |||| |||||||| |||| |||||||||||||||||||||||| || ||||||||||||||||    
T  18657135 aacaactacaaattcgttataatgattaagtaaggttctacaattttggatgatcgaaccatactcagaga 18657205  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 3230573 - 3230528
Alignment:
Q  9 caaagtcgttatagtgatcaagtaaggttctacaattttggataat 54  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  3230573 caaagtcgttatagtgatcaagtaaagttgtacaattttggataat 3230528  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 20948609 - 20948685
Alignment:
Q  67 agagaagccttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatga 143  Q
    |||| ||| |||||||||||||| |||| ||| ||||||||||||  |  |||||||| | ||||| ||||||||||    
T  20948609 agagcagctttatcccatgcttctcgcattatatttgatgtaattcttgattgtattgattctattcttatgaatga 20948685  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 47244908 - 47244846
Alignment:
Q  99 ttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgctt 161  Q
    |||||||| ||||  || ||||| ||||||||||||||||||||||||||||||| |||||||    
T  47244908 ttttgatgcaattctttcttgtactgctactattattatgaatgaaacaccttaagtttgctt 47244846  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 47244711 - 47244673
Alignment:
Q  123 tgctactattattatgaatgaaacaccttaaatttgctt 161  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  47244711 tgctactattattatgaatgaaacaccttaagtttgctt 47244673  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 913948 - 914001
Alignment:
Q  10 aaagtcgttatagtgatcaagtaaggttctacaattttggataattgaaccata 63  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||| ||||||||    
T  913948 aaagtcgttgtagtgatcaagtaaagttgcacaattttggataatcgaaccata 914001  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 11737750 - 11737681
Alignment:
Q  76 ttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaa 145  Q
    ||||| ||||||||||||| |||||||||||||||| |   ||||||| ||||||||||| | |||||||    
T  11737750 ttatctcatgcttcacgcattatttttgatgtaattccaagttgtattactactattatttttaatgaaa 11737681  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 9680333 - 9680402
Alignment:
Q  76 ttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaa 145  Q
    ||||| ||||||||| |||||||||||||||||||| |   || |||||||||||||||| | |||||||    
T  9680333 ttatctcatgcttcaagcagtatttttgatgtaattccaagttatattgctactattatttttaatgaaa 9680402  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 41687223 - 41687154
Alignment:
Q  76 ttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaa 145  Q
    ||||| |||||||||| || |||||||||||||||| |   || |||||||||||||||| | |||||||    
T  41687223 ttatctcatgcttcacacaatatttttgatgtaattccaagttttattgctactattatttttaatgaaa 41687154  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 14835539 - 14835511
Alignment:
Q  117 ttgtattgctactattattatgaatgaaa 145  Q
    |||||||||||||||||||||||||||||    
T  14835539 ttgtattgctactattattatgaatgaaa 14835511  T

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