View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21030_low_4 (Length: 411)

Name: NF21030_low_4
Description: NF21030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21030_low_4
NF21030_low_4
[»] chr8 (14 HSPs)
chr8 (19-401)||(6364190-6364571)
chr8 (19-205)||(7460584-7460770)
chr8 (19-228)||(6275645-6275854)
chr8 (19-121)||(6353596-6353698)
chr8 (19-119)||(6392094-6392194)
chr8 (19-248)||(6333053-6333282)
chr8 (19-215)||(6425192-6425388)
chr8 (19-234)||(6290391-6290606)
chr8 (28-119)||(6411258-6411349)
chr8 (19-229)||(6322505-6322715)
chr8 (19-121)||(6371300-6371402)
chr8 (19-121)||(6264927-6265029)
chr8 (28-118)||(6458262-6458352)
chr8 (28-113)||(6452174-6452259)
[»] chr2 (1 HSPs)
chr2 (28-115)||(42694394-42694481)
[»] chr5 (1 HSPs)
chr5 (19-122)||(9603074-9603177)
[»] chr3 (2 HSPs)
chr3 (19-118)||(36743922-36744021)
chr3 (45-113)||(35722304-35722372)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 6364571 - 6364190
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364571 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 6364472  T
Q  119 tgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagctcgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364471 tgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagctcgt 6364372  T
Q  219 aaaggttataaactttatgttctatcttaacacttgagtatgttatattttaagaaattctggcaaaaattaagtgatatggtactaaaatgtgaaattg 318  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364371 aaaggttat-aactttacgttctatcttaacacttgagtatgttatattttaagaaattctggcaaaaattaagtgatatggtactaaaatgtgaaattg 6364273  T
Q  319 tattctacttgacaactaatgtttttatccctgatgttgtttactaagtctttttgttgatacaaatgtttactctgcctatg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6364272 tattctacttgacaactaatgtttttatccctgatgttgtttactaagtctttttgttgatacaaatgtttactctgcttatg 6364190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 7460770 - 7460584
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  7460770 actacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatgggacagaatatatgattatgatgtctacaatgacttggg 7460671  T
Q  119 tgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcag 205  Q
    ||||   ||| |||| ||||| |||||||||||||||| ||||||| || | | | | |||||||||||||| || |||||||||||    
T  7460670 tgatcccgaccagaaagctagcttggctcgtcctgttgctggaggacctggaaacttgccttaccctcgaaggggaagaaccggcag 7460584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 6275854 - 6275645
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    |||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||| || ||||| || ||||||||||||||| ||||    
T  6275854 actatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaatgatgtggg 6275755  T
Q  119 tgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagctcgt 218  Q
    ||||   |||||||| || || ||||||||||| ||| |||||||||| | |||| | ||||||||||||||||||||||||||||||||| |||||       
T  6275754 tgatcctgacaagaaagcaagcttggctcgtcccgttattggaggatccaacaccttgccttaccctcgaagagggagaaccggcaggaaaccagctaag 6275655  T
Q  219 aaaggttata 228  Q
    ||||||||||    
T  6275654 aaaggttata 6275645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 6353698 - 6353596
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  6353698 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgatttggg 6353599  T
Q  119 tga 121  Q
    |||    
T  6353598 tga 6353596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 6392194 - 6392094
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6392194 actacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg 6392095  T
Q  119 t 119  Q
    |    
T  6392094 t 6392094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 6333282 - 6333053
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| ||| || || ||||| || ||||| |||||||| |||||    
T  6333282 actacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacgatgtttacaatgacttggg 6333183  T
Q  119 tgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagctcgt 218  Q
    ||||   |||||||| |  || ||||||||||| |||||||||||||| |  | | | |||||||||||||| ||||||||||||||||||   |||       
T  6333182 tgatcctgacaagaaagaaagcttggctcgtcccgttgttggaggatccaataacttgccttaccctcgaagggggagaaccggcaggaaacatgctaaa 6333083  T
Q  219 aaaggttataaactttatgttctatcttaa 248  Q
    |||||| |||||||||||| ||||||||||    
T  6333082 aaaggtgataaactttatgctctatcttaa 6333053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 6425388 - 6425192
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    |||| ||||||||||| |||||||||||||||||||||||||  |||||||| |||||||||||||| || |||||||| ||||||||||||||||||||    
T  6425388 actatagacaagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttggg 6425289  T
Q  119 tgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagct 215  Q
    |||    |||  |||  |||  |||| |||||| ||| |||||||||| |||||| | |||||||||||||| |||||||| ||||| ||| |||||    
T  6425288 tgagcctgactcgaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaacaggcagaaaaccagct 6425192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 6290606 - 6290391
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||    
T  6290606 actatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgatttagg 6290507  T
Q  119 tgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagctcgt 218  Q
    |||    |||  |||  ||   ||||| ||||   || |||| ||||| ||||   |||||||||||||||| || |||||||||||| || |||||       
T  6290506 tgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcaatttcccttaccctcgaaggggaagaaccggcagggaaccagctaag 6290407  T
Q  219 aaaggttataaacttt 234  Q
    ||||||||||||||||    
T  6290406 aaaggttataaacttt 6290391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 6411349 - 6411258
Alignment:
Q  28 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttgggt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  6411349 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttgggt 6411258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 6322715 - 6322505
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    |||| ||| |||||||||||||||||||||||||||||||||| ||  |||| ||||||   || ||||| ||||| || ||||| |||||||| |||||    
T  6322715 actatagagaagaagaattgaagactttaagaggagatggaacgggtcagcgcaaggaacacgatagaatctatgactacgatgtttacaatgacttggg 6322616  T
Q  119 tgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagctcgt 218  Q
    ||||   |||||| ||||    ||||||||||| ||| ||||||||||   |||| | |||||||||||||| || ||||||||||||||| |||||       
T  6322615 tgatcctgacaagtacgcacacttggctcgtcccgttattggaggatccgacaccttgccttaccctcgaaggggcagaaccggcaggaaaccagctaaa 6322516  T
Q  219 aaaggttataa 229  Q
    |||||||||||    
T  6322515 aaaggttataa 6322505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 6371402 - 6371300
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    |||||||||||||||| |||||||||||||||||||||||||| || ||||| || |||||||| || || ||||| || ||||||||||||||||||||    
T  6371402 actacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatgtctacaatgatttggg 6371303  T
Q  119 tga 121  Q
    |||    
T  6371302 tga 6371300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 6265029 - 6264927
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    |||| ||||||  ||| |||||||||||||||||||||||||| || ||||| || |||||||| ||| | |||||||||||||| ||||||||||||||    
T  6265029 actatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttggg 6264930  T
Q  119 tga 121  Q
    |||    
T  6264929 tga 6264927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 6458352 - 6458262
Alignment:
Q  28 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||| || |||  ||| ||| | |||||||||||| | || |||||||||||    
T  6458352 aagaagagttgcagactctaagaggagatggaactggagagcgcaaagaagcggatagagtttatgattatgatatttataatgatttggg 6458262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 6452259 - 6452174
Alignment:
Q  28 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgat 113  Q
    ||||||| ||| ||| | |||||||||||||||| ||||| || || |||||||| || ||||| ||||||||||| || ||||||    
T  6452259 aagaagagttgcagaatctaagaggagatggaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgat 6452174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 42694481 - 42694394
Alignment:
Q  28 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgattt 115  Q
    ||||||||||||| | |||||||||||||||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||    
T  42694481 aagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgattt 42694394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 9603074 - 9603177
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    |||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||||||| | |||||||||||||||||||||||| | ||    
T  9603074 actacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgatcttgg 9603173  T
Q  119 tgat 122  Q
    ||||    
T  9603174 tgat 9603177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 36743922 - 36744021
Alignment:
Q  19 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 118  Q
    |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||| |||||||||| ||||| |||||||||||||| ||||||||||||||    
T  36743922 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 36744021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 35722304 - 35722372
Alignment:
Q  45 ttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgat 113  Q
    ||||||||| |||||   |||||||||||| |||  || ||||| ||||||||||||||||||||||||    
T  35722304 ttaagaggaaatggagaaggagagcgtaagaaatcagacagaatctatgattatgatgtctacaatgat 35722372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University