View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21030_low_5 (Length: 378)
Name: NF21030_low_5
Description: NF21030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21030_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 17352656 - 17352929
Alignment:
| Q |
6 |
aaacatctccaccagataaaataaaatgcaggaagtaacataatgggttgaaatgtaatcagaacaaaataggttataacaattcaaaaattgatctgaa |
105 |
Q |
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| T |
17352656 |
aaacatctccaccagataaaataaaatgcaggaagtaacataatgggttgaaatgtaatcagaacaaaataggttataacaattcaaaaattgatctgaa |
17352755 |
T |
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| Q |
106 |
tcattaaaagaaaaacgtaggaagaatatgaattatgaagttttattagatctaaaaccgtcaattccaataggaaagaaaggtggtatgatttatatta |
205 |
Q |
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| T |
17352756 |
tcattaaaagaaaaacataggaagaatatgaattatgaagttttattagatctgaaaccgtaaattccaataggaaagaaaggcggtatgatttatatta |
17352855 |
T |
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| Q |
206 |
aatgacataaactataacaggtccaccacatcaacaaaggataatagaagcaataaccagtgaatatagcttca |
279 |
Q |
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| T |
17352856 |
aatgacataaactataacaggtccaccacatcaacaatggataatagaagcaataaccagtgaatatagcttca |
17352929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 281 - 363
Target Start/End: Original strand, 17352968 - 17353050
Alignment:
| Q |
281 |
aaataccagatggaaaatattactagataattcatgactacgtactatgttcatacaatttaacaagattcttatataatttc |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17352968 |
aaataccagatggaaaatattactagataattcatgactacgtactatgttcatacaatttaacaagattcttatataatttc |
17353050 |
T |
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