View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21030_low_7 (Length: 369)

Name: NF21030_low_7
Description: NF21030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21030_low_7
NF21030_low_7
[»] chr5 (11 HSPs)
chr5 (17-369)||(9837937-9838289)
chr5 (47-362)||(10594013-10594328)
chr5 (19-244)||(19607476-19607701)
chr5 (32-241)||(10603129-10603338)
chr5 (42-241)||(10590061-10590260)
chr5 (42-228)||(10579396-10579582)
chr5 (190-306)||(10557231-10557347)
chr5 (49-126)||(10610201-10610278)
chr5 (32-163)||(10599542-10599673)
chr5 (254-306)||(7191313-7191365)
chr5 (49-109)||(10563535-10563595)
[»] chr6 (2 HSPs)
chr6 (28-264)||(24352350-24352586)
chr6 (331-369)||(24352309-24352347)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 9837937 - 9838289
Alignment:
Q  17 tggtttccactaatgtcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||    
T  9837937 tggtttccactaatgtcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagattttattccctcctatttcaaaagatcgga 9838036  T
Q  117 gattagggagagtttggaacatatttgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaagg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838037 gattagggagagtttggaacatatttgatggaagagagccactaaagtgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaagg 9838136  T
Q  217 tggaaatgtacctgatagtttgttgtgagtcactgttattattatcaagttttttaggcgacatatttctcgtggaatatatccctctaaattattaaaa 316  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  9838137 tggaaatgtacctgatagtttgttgtcagtcactgttattattatcaagttttttaggcgacatatttctcgtggaatatctccctctaaattattataa 9838236  T
Q  317 acaaccccaaaacttatcaaggaagaaaggttacctatgaatggcgagattcc 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838237 acaaccccaaaacttatcaaggaagaaaggttacctatgaatggcgagattcc 9838289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 47 - 362
Target Start/End: Complemental strand, 10594328 - 10594013
Alignment:
Q  47 gtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggagagtttggaacatatttgatg 146  Q
    |||||||| ||| |||||||| | ||||||  |||||| || |||||||| ||||||||||||  || |||||| ||||||||||||||||| |  | ||    
T  10594328 gtagaagcgtttgcaatggaaatagggattttacctaacatctgattcccgcctatttcaaaaacttggagattggggagagtttggaacatgtcgggtg 10594229  T
Q  147 gaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggtggaaatgtacctgatagtttgttgtgagt 246  Q
    ||||||||||||  |||| |||  |||  | ||||||    |||||||||| ||||||||  |||||||||||||||||||| ||||| |||||   ||     
T  10594228 gaagagagccaccgaagctatttgctggggctgagatgccagtaagagatgtcatattgtgaagacaaggtggaaatgtaccagataggttgttcacagg 10594129  T
Q  247 cactgttattattatcaagttttttaggcgacatatttctcgtggaatatatccctctaaattattaaaaacaaccccaaaacttatcaaggaagaaagg 346  Q
    || |   |||||| |||||||||| ||  ||||||||||| |||||||||  ||||||||||  ||  || ||||||||| || |||||||||||||||     
T  10594128 cagtaacattattgtcaagtttttaagatgacatatttcttgtggaatatcaccctctaaatagttgtaaccaaccccaagacctatcaaggaagaaaga 10594029  T
Q  347 ttacctatgaatggcg 362  Q
    ||||||||||||||||    
T  10594028 ttacctatgaatggcg 10594013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 19607476 - 19607701
Alignment:
Q  19 gtttccactaatgtcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgaga 118  Q
    |||| |||||||  ||||||||||||| | |||| |||||  ||||||||| || |||| |||| | ||||||||||| || ||| | |||| ||  |||    
T  19607476 gttttcactaataacaaatgatgtcaaggaagaaccatttgtaatggaagtaggtattggacctgatatttgattcccaccaattgctaaagtttgaaga 19607575  T
Q  119 ttagggagagtttggaacatatt-tgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggt 217  Q
    ||  ||||||| | |||||| || ||| |||||||||||| ||||| ||||| |||| | ||| ||||  |||||||||||||||||| | |||||||      
T  19607576 ttgcggagagtattgaacatgttatga-ggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaagaa 19607674  T
Q  218 ggaaatgtacctgatagtttgttgtga 244  Q
    ||||||||||| |||| ||||||||||    
T  19607675 ggaaatgtaccagataatttgttgtga 19607701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 10603338 - 10603129
Alignment:
Q  32 tcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggagagttt 131  Q
    |||||| ||||||||| |||||||||   ||| ||||| ||||||| |||||||| ||||||   ||| | |  |||| ||| |||||| |||||||| |    
T  10603338 tcaaataatgtcaaagaagaagcattcgaaattgaagtggggattggacctaagaattgatttgatccaactgtaaaatattggagattggggagagtgt 10603239  T
Q  132 ggaacatatttgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggtggaaatgtacctga 231  Q
    |||||||||| | |||||||||||||||||||| |||  ||||   |||||||| |  |||||||| |||||| || |||||||  ||||||||||| ||    
T  10603238 ggaacatattgggtggaagagagccactaaagctattcactgcaactgagatcacttgaagagatgtcatattataaagacaagaaggaaatgtaccaga 10603139  T
Q  232 tagtttgttg 241  Q
     | |||||||    
T  10603138 caatttgttg 10603129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 10590061 - 10590260
Alignment:
Q  42 tcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggagagtttggaacatatt 141  Q
    |||||||| |||||||| |||||||||||||||||| |||  ||| |||||| ||||| ||| || |  | | ||| ||||||||||| | |||||||||    
T  10590061 tcaaagtataagcatttgcaatggaagttgggattggaccagagaattgatttcctccaattccatagaaatagaggttagggagagtgttgaacatatt 10590160  T
Q  142 tgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggtggaaatgtacctgatagtttgttg 241  Q
     |  ||||||||||||||||||| |||  ||||   |||||||   ||||||||||||||||| || |||||||   |||||||||| || | |||||||    
T  10590161 gggcggaagagagccactaaagctattcgctgcaactgagatccccgtaagagatgacatattataaagacaagaaagaaatgtaccagacaatttgttg 10590260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 10579582 - 10579396
Alignment:
Q  42 tcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggagagtttggaacatatt 141  Q
    |||||||| |||||||| |||||||||||||||||| |||  ||| |||||| ||||| ||| || |  | | ||| ||||||||||| | |||||||||    
T  10579582 tcaaagtataagcatttgcaatggaagttgggattggaccagagaattgatttcctccaattccatagaaatagaggttagggagagtgttgaacatatt 10579483  T
Q  142 tgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggtggaaatgtacc 228  Q
     | ||||||||| |||||||||| |||  || |   |||||||   ||||||||||||||||| || |||||||   ||||||||||    
T  10579482 gggtggaagagaaccactaaagctattcgcttcaactgagatccccgtaagagatgacatattataaagacaagaaagaaatgtacc 10579396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 306
Target Start/End: Complemental strand, 10557347 - 10557231
Alignment:
Q  190 aagagatgacatattgtagagacaaggtggaaatgtacctgatagtttgttgtgagtcactgttattattatcaagttttttaggcgacatatttctcgt 289  Q
    |||||||||||| ||||| ||||| |  |||| |||||| |||||||||||| |   || || |||| |  |||||| ||||||||||||||||||| |     
T  10557347 aagagatgacatgttgtaaagacatgaaggaactgtaccagatagtttgttgagccccaatgctattttagtcaagtgttttaggcgacatatttcttgg 10557248  T
Q  290 ggaatatatccctctaa 306  Q
    ||||||| |||||||||    
T  10557247 ggaatatctccctctaa 10557231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 10610278 - 10610201
Alignment:
Q  49 agaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggag 126  Q
    |||||||||| ||||||||   ||||||| |||| ||| |||||| |||||   ||||||||||||||||||||||||    
T  10610278 agaagcatttgcaatggaaacagggattggacctgagaattgatttcctccaggttcaaaagatttgagattagggag 10610201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 163
Target Start/End: Complemental strand, 10599673 - 10599542
Alignment:
Q  32 tcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggagagttt 131  Q
    |||||| ||||||||| ||||||||||  ||| ||||| ||||||| |||| ||| || |||   ||| |    |||| ||| |||||| |||||||| |    
T  10599673 tcaaataatgtcaaagaagaagcatttgaaattgaagtagggattggacctgagaatttatttgatccgaccgtaaaatattggagattggggagagtgt 10599574  T
Q  132 ggaacatatttgatggaagagagccactaaag 163  Q
     ||||||||| | |||||||||||||||||||    
T  10599573 agaacatattgggtggaagagagccactaaag 10599542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 7191365 - 7191313
Alignment:
Q  254 attattatcaagttttttaggcgacatatttctcgtggaatatatccctctaa 306  Q
    |||||| |||||||||| ||||  ||||||||||||||||| | |||||||||    
T  7191365 attattgtcaagtttttgaggctgcatatttctcgtggaatgtctccctctaa 7191313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 10563595 - 10563535
Alignment:
Q  49 agaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaa 109  Q
    ||||||||||||||||||| | ||||||| |||| ||| ||||||  |||| |||||||||    
T  10563595 agaagcatttacaatggaaatagggattggacctgagaattgatttgctccaatttcaaaa 10563535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 28 - 264
Target Start/End: Complemental strand, 24352586 - 24352350
Alignment:
Q  28 aatgtcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggaga 127  Q
    |||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| | |||||||||||||| || |||||| |||    
T  24352586 aatgtcaaataatgtcaaaatagaagcattttcaatggaagttgggattgaaccaaagatttgattcccgcgtatttcaaaagattggatattaggaaga 24352487  T
Q  128 gtttggaacatatttgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggtggaaatgtac 227  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||  ||||||| ||||||||||||| ||| |||||||||||||    
T  24352486 gtttggaacatatttgattgaagagagccgctaaagcgattctctgcagttgagatcaaaataagagacgacatattgtagaaacacggtggaaatgtac 24352387  T
Q  228 ctgatagtttgttgtgagtcactgttattattatcaa 264  Q
    |||||| | |||||  || ||| ||||||||| ||||    
T  24352386 ctgataatctgttggcagccaccgttattattttcaa 24352350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 369
Target Start/End: Complemental strand, 24352347 - 24352309
Alignment:
Q  331 tatcaaggaagaaaggttacctatgaatggcgagattcc 369  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  24352347 tatcaaggaagaaagattacctatgaatggtgagattcc 24352309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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