View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21031_high_1 (Length: 412)
Name: NF21031_high_1
Description: NF21031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21031_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 178 - 396
Target Start/End: Original strand, 36774125 - 36774343
Alignment:
| Q |
178 |
gccctgttcagaagttgaaatagggtccatgatcaaactagaggaactaattaagatgaaaataatgtatcatatactacttcacataaaccagtttaac |
277 |
Q |
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| T |
36774125 |
gccctgttcagaagttgaaatagggtccatgatcaaactagaggaactaattaagatgaaaataatgtatcatatactacttcacataaaccagtttaac |
36774224 |
T |
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| Q |
278 |
taataagtgctgtgaataagttgcatagaaatttcaaacctgataccttgtcttcgcgtgtgactagagttgggaagcaaagaggaagttgctaactacg |
377 |
Q |
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| T |
36774225 |
taataagtgccgtgaataagttgcatagaaatttcaaacctgataccttgtcgtcgcgtgtgactagagttgggaagcaaagaggaagttgctaactacg |
36774324 |
T |
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| Q |
378 |
gaaatttcaaagaactatg |
396 |
Q |
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| T |
36774325 |
gaaatttcaaagaactatg |
36774343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 36773898 - 36774070
Alignment:
| Q |
8 |
aaacacagacaaacaatataaaagagaaagacataacattgagataatcg--acccgaaaagccaaagaccaaataagtgcatgccttgtaggaagaacg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36773898 |
aaacacagacaaacaatataaaagagaaagacataacattgagataatcggaacccgaaaagccaaagaccaaataagtgcatgccttgtaggaagaacg |
36773997 |
T |
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| Q |
106 |
agaagtaaaataaaacttttgtggtctgttataagcatgaattagattcaataatgagagaaggcaagaaggg |
178 |
Q |
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| T |
36773998 |
agaagtaaaataaaacttttgtggtctgttataagcatgaattagattcaataacgagagaaggcaagaaggg |
36774070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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