View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21031_high_11 (Length: 306)
Name: NF21031_high_11
Description: NF21031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21031_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 29 - 292
Target Start/End: Original strand, 3573721 - 3573984
Alignment:
| Q |
29 |
aatgataagatgtatagaggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcat |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
3573721 |
aatgataagatgtatagaggggtgaggaagagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcat |
3573820 |
T |
|
| Q |
129 |
atgacacacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctcttaccat |
228 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |
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| T |
3573821 |
atgacacacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgtggtcctcatgcaagtttcaatttccctaatacaccttttaccat |
3573920 |
T |
|
| Q |
229 |
caatgtagcttttcatggttaccaatctctttcaccacaagaaattcaagaagttgctgctaag |
292 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573921 |
caatgtagcttttcatggttaccaatctctttcaccacaagaaattcaagaagttgctgctaag |
3573984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 33 - 292
Target Start/End: Original strand, 3589017 - 3589285
Alignment:
| Q |
33 |
ataagatgtatagaggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatga |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3589017 |
ataagatgtatagaggggtgaggaagagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtagggagagaatatggttaggatcatatga |
3589116 |
T |
|
| Q |
133 |
cacacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctcttaccatcaat |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3589117 |
cacacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgtggtcctcatgcaagtttcaatttccctaacacacctcttaccatcaat |
3589216 |
T |
|
| Q |
233 |
gtagcttt---tca------tggttaccaatctctttcaccacaagaaattcaagaagttgctgctaag |
292 |
Q |
| |
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|||||| | ||| |||| | ||||||||||||||| |||| |||||||| |||||||||||| |
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| T |
3589217 |
gtagctgtgaatcatggtgttggtcatcaatctctttcaccagaagagattcaagacgttgctgctaag |
3589285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 3562480 - 3562692
Alignment:
| Q |
32 |
gataagatgtatagaggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatg |
131 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3562480 |
gataagatgtacaaaggggtgaggaagagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtagggagagaatatggttaggatcatatg |
3562579 |
T |
|
| Q |
132 |
acacacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctcttaccatcaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3562580 |
acacacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctcttaccatcaa |
3562679 |
T |
|
| Q |
232 |
tgtagcttttcat |
244 |
Q |
| |
|
| ||| ||||||| |
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|
| T |
3562680 |
tttagtttttcat |
3562692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 3551307 - 3551512
Alignment:
| Q |
33 |
ataagatgtatagaggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatga |
132 |
Q |
| |
|
||||||| || || ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3551307 |
ataagatatacaggggggtgaggaagagaaattggggaaaatgggtatctgagattaggcttccaaatagtagggagagaatatggttaggatcatatga |
3551406 |
T |
|
| Q |
133 |
cacacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctcttaccatcaat |
232 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3551407 |
cacacaagagaaagcagcaagagcatttgatgcagccctttattgtctacgtggtcctcatgcaagtttcaatttccctaacacacctcttaccatcaat |
3551506 |
T |
|
| Q |
233 |
gtagct |
238 |
Q |
| |
|
|||||| |
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|
| T |
3551507 |
gtagct |
3551512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 40396185 - 40396237
Alignment:
| Q |
46 |
aggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggcttccaa |
98 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||| ||||||||||||| |||| |
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| T |
40396185 |
aggggtgaggcagagacattggggaaaatgggttgctgaaattaggctaccaa |
40396237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 69 - 292
Target Start/End: Original strand, 10025200 - 10025424
Alignment:
| Q |
69 |
gaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggcatttgatgcagc |
168 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
10025200 |
gaaaatgggtatctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcacatgacacacaagaaaaagcagctagagcatttgatgcagc |
10025299 |
T |
|
| Q |
169 |
cctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctcttaccatcaatgtagcttttcatggtt-accaatctctttcaccaca |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10025300 |
cctatattgtctacgtggtcctcatgctagtttcaatttccctaatacacctcttaccatcaatgtagcttttcatggttaaccaatctctttcaccaca |
10025399 |
T |
|
| Q |
268 |
agaaattcaagaagttgctgctaag |
292 |
Q |
| |
|
||| ||||||||||||||||||||| |
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|
| T |
10025400 |
agagattcaagaagttgctgctaag |
10025424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 48645819 - 48645655
Alignment:
| Q |
58 |
gagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
157 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| |||||||| | || ||||||||||||||||||||||| || || |||||||||| ||| |
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| T |
48645819 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
48645720 |
T |
|
| Q |
158 |
tttgatgcagccctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctct |
222 |
Q |
| |
|
|||||||| || || |||||||| ||||||| |||||| | ||||||||||| | | |||||||| |
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| T |
48645719 |
tttgatgctgcactttattgtcttcgtggtcgtcatgcaaatttcaatttccttgatacacctct |
48645655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 48654232 - 48654068
Alignment:
| Q |
58 |
gagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
157 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| |||||||| | || ||||||||||||||||||||||| || || |||||||||| ||| |
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|
| T |
48654232 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
48654133 |
T |
|
| Q |
158 |
tttgatgcagccctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctct |
222 |
Q |
| |
|
|||||||| || || |||||||| ||||||| |||||| | ||||||||||| | | |||||||| |
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|
| T |
48654132 |
tttgatgctgcactttattgtcttcgtggtcgtcatgcaaatttcaatttccttgatacacctct |
48654068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 18735994 - 18735900
Alignment:
| Q |
39 |
tgtatagaggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatgac |
133 |
Q |
| |
|
|||||||||| || ||||||||||| ||||| |||| ||||| ||||| ||||| ||||| ||| | |||||||||||||||| || |||||| |
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|
| T |
18735994 |
tgtatagaggagtaaggaagagaaagtgggggaaatatgtgtcagaaatcaggctgccaaacagccgccagagaatatggttaggttcctatgac |
18735900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 18733425 - 18733341
Alignment:
| Q |
39 |
tgtatagaggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttagg |
123 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| | ||||||||||| || || ||||| ||| | | |||||||||||||| |
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|
| T |
18733425 |
tgtatagaggagtaaggaagaggaaatggggaaagtatgtgtctgaaatcagactaccaaacagccgccaaagaatatggttagg |
18733341 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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