View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21031_high_14 (Length: 303)
Name: NF21031_high_14
Description: NF21031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21031_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 4215635 - 4215377
Alignment:
| Q |
14 |
agagagccaaaacaaatgaagcagtgatttttgccatagtgtatgaatgagtatttttatttttctttattgagtttgtttagcatggaatgaaattggc |
113 |
Q |
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| T |
4215635 |
agagagccaaaacaaatgaagcagtgatttttgccatagtgtatgaatgagtatttttatttttctttattgagtttgtttagcatggaatgaaattggc |
4215536 |
T |
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| Q |
114 |
ttcatatgaatccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtgcctatgcaagttcaaaaaataatttcacaaaatta |
213 |
Q |
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| T |
4215535 |
ttcatatgaatccaatttatagatctattgatttccttaaatgagaagtgaatgaattaattgtgcctacgcaagttcaaaaaataatttcacaaaatta |
4215436 |
T |
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| Q |
214 |
aggtaaagatgaaaattgtgtgggagccatgtcttaaatactatggttgtctagaatat |
272 |
Q |
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| T |
4215435 |
aggtaaagatgaaaattgtgtgggagccatgtcttaaatattatggttgtctagaatat |
4215377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 275
Target Start/End: Complemental strand, 4218131 - 4217947
Alignment:
| Q |
89 |
ttgtttagcatggaatgaaattggcttcatatgaatccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtgcctatgcaag |
188 |
Q |
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| T |
4218131 |
ttgttttgcatggaataaaattgactcaatagtactccaatttatagaattgttgatttctctaaatgataagtgaatgaattaattgtggttttgcgtg |
4218032 |
T |
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| Q |
189 |
ttcaaaaaataatttcacaaaattaaggtaaagatgaaaattgtgtgggagccatgtcttaaatactatggttgtctagaatattgt |
275 |
Q |
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| T |
4218031 |
at-agaaaacaatttcacaaaattagggtaaagctgaaaactgtgtgggagccaggt-ttaaatattaaggttgaccggaatattgt |
4217947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 4053899 - 4053845
Alignment:
| Q |
124 |
tccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtg |
178 |
Q |
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| T |
4053899 |
tccaatttataggactattgattaccttaaatgagaagtgaatcaattaaatgtg |
4053845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 3925020 - 3925074
Alignment:
| Q |
124 |
tccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtg |
178 |
Q |
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| T |
3925020 |
tccaatttataggactaattattaccttaaatgagaagtgaatcaattaaatgtg |
3925074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 11952603 - 11952648
Alignment:
| Q |
127 |
aatttatagacctattgattaccttaaatgagaagtgaatgaatta |
172 |
Q |
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| T |
11952603 |
aatttatagaactagtgatttccttaaatgagaagtgaatgaatta |
11952648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 54726884 - 54726832
Alignment:
| Q |
24 |
aacaaatgaagcagtgatttttgccatagtgtatgaatgagtatttttatttt |
76 |
Q |
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|||||||||||||||| ||||||||||| | || |||| |||||||||||||| |
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| T |
54726884 |
aacaaatgaagcagtggtttttgccataatataagaatcagtatttttatttt |
54726832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 5388922 - 5388875
Alignment:
| Q |
126 |
caatttatagacctattgattaccttaaatgagaagtgaatgaattaa |
173 |
Q |
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| T |
5388922 |
caatttatcgaactaatgatttccttaaatgagaagtgaatgaattaa |
5388875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 5398462 - 5398416
Alignment:
| Q |
128 |
atttatagacctat-tgattaccttaaatgagaagtgaatgaattaa |
173 |
Q |
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| T |
5398462 |
atttatagaactatatgatttccttaaatgagaagtgaatgaattaa |
5398416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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