View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21031_high_7 (Length: 323)

Name: NF21031_high_7
Description: NF21031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21031_high_7
NF21031_high_7
[»] chr4 (11 HSPs)
chr4 (50-293)||(3762496-3762739)
chr4 (37-287)||(3776564-3776814)
chr4 (50-286)||(3780890-3781126)
chr4 (50-275)||(3751517-3751742)
chr4 (50-282)||(3745700-3745932)
chr4 (37-292)||(3755371-3755626)
chr4 (37-292)||(3766899-3767154)
chr4 (212-292)||(3771304-3771384)
chr4 (50-174)||(3770675-3770799)
chr4 (128-187)||(3789116-3789175)
chr4 (119-187)||(3845060-3845128)
[»] chr7 (1 HSPs)
chr7 (50-286)||(25985387-25985623)
[»] scaffold0433 (1 HSPs)
scaffold0433 (119-187)||(10020-10088)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 50 - 293
Target Start/End: Original strand, 3762496 - 3762739
Alignment:
Q  50 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaactttattaagagctggattcctccccaagatggtaatagtacttccattatact 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  3762496 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatact 3762595  T
Q  150 ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact 249  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3762596 ttccttcaatgaaagcaaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaact 3762695  T
Q  250 cagttctggtcctaaagtcaaagggttgtcaatcatgcggacta 293  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  3762696 cagttcgggtcctaaagtcaaagggttgtcaatcatgcggacta 3762739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 37 - 287
Target Start/End: Original strand, 3776564 - 3776814
Alignment:
Q  37 agcagaacctgtggcaaatctgaaaagtccactgccaccaacaacaggcatctccctaactttattaagagctggattcctccccaagatggtaatagta 136  Q
    |||| ||||| | |||||||||||||||||||| ||||||||||||||||| |||||||| |||||| ||||  |||||||||||||||| ||||| |||    
T  3776564 agcataacctctagcaaatctgaaaagtccactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggta 3776663  T
Q  137 cttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaa 236  Q
    || |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||    
T  3776664 ctaccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaa 3776763  T
Q  237 caagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgc 287  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  3776764 caagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgc 3776814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 50 - 286
Target Start/End: Original strand, 3780890 - 3781126
Alignment:
Q  50 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaactttattaagagctggattcctccccaagatggtaatagtacttccattatact 149  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||   |||||  || ||||||||||| | ||| |||| |||||| ||||||||||    
T  3780890 gcaaatctgaaaagtccactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatact 3780989  T
Q  150 ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact 249  Q
    |||||||||| ||||||||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  3780990 ttccttcaatgaaagcaaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaact 3781089  T
Q  250 cagttctggtcctaaagtcaaagggttgtcaatcatg 286  Q
    |||||||||||||||||| ||||||||||||||||||    
T  3781090 cagttctggtcctaaagttaaagggttgtcaatcatg 3781126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 50 - 275
Target Start/End: Original strand, 3751517 - 3751742
Alignment:
Q  50 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaactttattaagagctggattcctccccaagatggtaatagtacttccattatact 149  Q
    |||||||||||||||||||| ||||||| || ||||||||| ||| | ||||||| | | | ||||||||||||||| ||||| ||||| ||||||||||    
T  3751517 gcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatact 3751616  T
Q  150 ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact 249  Q
    |||||||||| |||||||| ||||| | ||  |||||||| |  || || |||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  3751617 ttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaact 3751716  T
Q  250 cagttctggtcctaaagtcaaagggt 275  Q
    || || |||||||| |||||||||||    
T  3751717 caattgtggtcctatagtcaaagggt 3751742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 50 - 282
Target Start/End: Original strand, 3745700 - 3745932
Alignment:
Q  50 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaactttattaagagctggattcctccccaagatggtaatagtacttccattatact 149  Q
    |||||||| ||| ||||  | |||||||||| |||||| |||||||| ||||||||||| | ||| ||||||||||| ||||||||||| ||||||||||    
T  3745700 gcaaatctaaaacgtccggtaccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatact 3745799  T
Q  150 ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact 249  Q
    |||||||||| ||||||||| |||| | ||  |  ||||  |  || |||| ||||||||||||||| || |||||||||||||||||||| ||||||||    
T  3745800 ttccttcaatgaaagcaaaagtcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttccaacaagcttagaact 3745899  T
Q  250 cagttctggtcctaaagtcaaagggttgtcaat 282  Q
    || || |||||||||||| ||||||||||||||    
T  3745900 catttttggtcctaaagttaaagggttgtcaat 3745932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 37 - 292
Target Start/End: Original strand, 3755371 - 3755626
Alignment:
Q  37 agcagaacctgtggcaaatctgaaaagtccactgccaccaacaacaggcatctccctaactttattaagagctggattcctccccaagatggtaatagta 136  Q
    |||| ||||| | ||||||||||||| |||||| |||||||  ||||||||||| |||||||||| || | | | |||||| ||||| || ||||  |||    
T  3755371 agcataacctctagcaaatctgaaaaatccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgta 3755470  T
Q  137 cttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaa 236  Q
    ||||||||||||||||||||| | |||||||||||||| | || ||| ||| | | ||| || |   |||||||||||||||||||||||||||||||||    
T  3755471 cttccattatactttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaa 3755570  T
Q  237 caagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggact 292  Q
    |||  |||||| |||  | |||||||||||| ||||||||||| ||||||||||||    
T  3755571 caatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggact 3755626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 37 - 292
Target Start/End: Original strand, 3766899 - 3767154
Alignment:
Q  37 agcagaacctgtggcaaatctgaaaagtccactgccaccaacaacaggcatctccctaactttattaagagctggattcctccccaagatggtaatagta 136  Q
    |||| ||||| | ||||||||||||| |||||| |||||||  ||||||||||| |||||||||| || | | | |||||| ||||| || ||||  |||    
T  3766899 agcataacctctagcaaatctgaaaactccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgta 3766998  T
Q  137 cttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaa 236  Q
    ||||||||||||||||||||| | |||||||||||||| | || ||| ||| | | ||| || |   |||||||||||||||||||||||||||||||||    
T  3766999 cttccattatactttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaa 3767098  T
Q  237 caagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggact 292  Q
    |||  |||||| |||  | |||||||||||| ||||||||||| ||||||||||||    
T  3767099 caatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggact 3767154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 3771304 - 3771384
Alignment:
Q  212 gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggact 292  Q
    |||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  3771304 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggact 3771384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 3770675 - 3770799
Alignment:
Q  50 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaactttattaagagctggattcctccccaagatggtaatagtacttccattatact 149  Q
    |||||||||||||||||| | |||||||  | ||||||||| | |||||||| || | |   |||||| ||||| || ||||   |||||||||||||||    
T  3770675 gcaaatctgaaaagtccaataccaccaatcataggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatact 3770774  T
Q  150 ttccttcaatcaaagcaaaattcat 174  Q
    |||||||| | ||| ||||||||||    
T  3770775 ttccttcagtaaaaacaaaattcat 3770799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 3789116 - 3789175
Alignment:
Q  128 gtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 187  Q
    ||||| || |||||||||||||||||||||| ||||||||| |||||  ||| |||||||    
T  3789116 gtaatggtgcttccattatactttccttcaaacaaagcaaagttcataatcataagaaaa 3789175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 3845060 - 3845128
Alignment:
Q  119 cccaagatggtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 187  Q
    |||||||| ||||| || ||||||||||| || |||||||  || |||||||||||| ||| |||||||    
T  3845060 cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa 3845128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 286
Target Start/End: Complemental strand, 25985623 - 25985387
Alignment:
Q  50 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaactttattaagagctggattcctccccaagatggtaatagtacttccattatact 149  Q
    ||||||| |||||| ||||| |||||||  | |||||| |||||||| |||| |  | | |||||||||||||| || || || || || ||||| ||||    
T  25985623 gcaaatcggaaaagaccactaccaccaattataggcatttccctaaccttatcagaaacaggattcctccccaaaatagtgatggtgctaccattgtact 25985524  T
Q  150 ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact 249  Q
    | |||||||| | |||||||||||| | ||  | ||   |||  ||    |||||||  || |||||||||||||| ||||||||||| | ||| |||||    
T  25985523 tcccttcaattatagcaaaattcatagccatgataaggtctacctcactttgtgatgttgaggcatagaatccttgtgcttttccaaccaatttggaact 25985424  T
Q  250 cagttctggtcctaaagtcaaagggttgtcaatcatg 286  Q
    || ||  |||||||| || |||||||| |||||||||    
T  25985423 caattgaggtcctaaggttaaagggttctcaatcatg 25985387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 10088 - 10020
Alignment:
Q  119 cccaagatggtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 187  Q
    |||||||| ||||| || ||||||||||| || |||||||  || |||||||||||| ||| |||||||    
T  10088 cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa 10020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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