View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21032_low_1 (Length: 440)
Name: NF21032_low_1
Description: NF21032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21032_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 206 - 428
Target Start/End: Complemental strand, 10072634 - 10072414
Alignment:
| Q |
206 |
gtgctatacaacaattaaaaatcttgtaccatttaacgtgtgaagtaagaaaaatatggttaaagacttttgacctttggtgaatatattaacttatata |
305 |
Q |
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| T |
10072634 |
gtgctatacaacaattaaaaatcttgtaccctttaacgtgtgaagtaagaaaaatatggttaaagacttttgacctttggtgaatatattaacttatata |
10072535 |
T |
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| Q |
306 |
taaatcaaataagtttctttaatattaacttataagtttctttaaaatatgtttcatgnnnnnnnngtctataaattaggtttatcgcaacccttgcatt |
405 |
Q |
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| T |
10072534 |
taaatcaaataagtttctttaatattaacttataagtttctttaaaatatgtttcatg--ttttttgtctataaattaggtttatcgcaacccttgcatt |
10072437 |
T |
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| Q |
406 |
ccattcattcaacccacctcttc |
428 |
Q |
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||||||||||||||||||||||| |
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| T |
10072436 |
ccattcattcaacccacctcttc |
10072414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 10072826 - 10072720
Alignment:
| Q |
14 |
tctccatcgtcgattaattgatatctaaaggctaacaattatcatgaatccttattactaccgatcaccactcaacaacaacaagaacacatgcaaaaga |
113 |
Q |
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| T |
10072826 |
tctccatcgtcgattaattgatatctaaaggctaacaattatcatgaatccttattgctaccgatcaccactcaacaacaacaagaacacgtgcaaaaga |
10072727 |
T |
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| Q |
114 |
atctttt |
120 |
Q |
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||||||| |
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| T |
10072726 |
atctttt |
10072720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 363
Target Start/End: Complemental strand, 10084252 - 10084134
Alignment:
| Q |
244 |
tgtgaagtaagaaaaat-atggttaaagacttttgaccttt-ggtgaatatattaacttatatataaatcaaataagtttctttaat-attaacttataa |
340 |
Q |
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| T |
10084252 |
tgtgaagtaagaaaaaagatggataaagatttttgaccttttggtgaatatat---cttttata-aaataaaataagtttctttaataattaatttaata |
10084157 |
T |
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| Q |
341 |
gtttctttaaaatatgtttcatg |
363 |
Q |
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|||||||| ||| ||||| |||| |
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| T |
10084156 |
gtttcttttaaagatgttgcatg |
10084134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 363
Target Start/End: Complemental strand, 10080056 - 10079935
Alignment:
| Q |
244 |
tgtgaagtaagaaaaat-atggttaaagacttttgaccttt-ggtgaatatat--taacttatatataaatcaaataagtttctttaat-attaacttat |
338 |
Q |
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|||||||||||||||| |||| |||||| ||||||||||| ||||||||||| ||| ||||| |||| ||||||||||||||||| ||||| ||| |
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| T |
10080056 |
tgtgaagtaagaaaaaagatggataaagatttttgaccttttggtgaatatatcttaaattata---aaataaaataagtttctttaataattaatttaa |
10079960 |
T |
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| Q |
339 |
aagtttctttaaaatatgtttcatg |
363 |
Q |
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||||||||| ||| ||||| |||| |
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| T |
10079959 |
tagtttcttttaaagatgttgcatg |
10079935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 10104250 - 10104213
Alignment:
| Q |
89 |
caacaacaagaacacatgcaaaagaatcttttcttcaa |
126 |
Q |
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||||||||| |||||||||||| ||||||||||||||| |
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| T |
10104250 |
caacaacaacaacacatgcaaatgaatcttttcttcaa |
10104213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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