View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21032_low_3 (Length: 222)
Name: NF21032_low_3
Description: NF21032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21032_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 47807944 - 47807741
Alignment:
| Q |
1 |
taaagagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacagggaaacaaagta |
100 |
Q |
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| T |
47807944 |
taaagagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacagggaaacaaagta |
47807845 |
T |
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| Q |
101 |
gttcaaattttccgctatatatttaagtnnnnnnnnnnnnnnnncaattcaaaatgtcacgatagtcgccgaatgacaacttaaaacaatgacacggttt |
200 |
Q |
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| T |
47807844 |
gttcaaattttccgctatatatttaagtaaaaataaaataaaaacaattcaacgtgtcacgatagtcgccgaatgacaacttaaaacaatgacacggttt |
47807745 |
T |
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| Q |
201 |
tact |
204 |
Q |
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|||| |
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| T |
47807744 |
tact |
47807741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 47805204 - 47805085
Alignment:
| Q |
4 |
agagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacagggaaacaaagtagtt |
103 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||| |||| |||| |
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| T |
47805204 |
agagtcaagaatgaatacatgtttcgttatatcctcgtgaagacttgtagccttctcttgaagatcctccttccaatgccagcagggaaa-aaagaagtt |
47805106 |
T |
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| Q |
104 |
caaattttccgctatatattt |
124 |
Q |
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|||| |||||||||||||| |
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| T |
47805105 |
aaaatcatccgctatatattt |
47805085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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