View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21033_high_2 (Length: 386)
Name: NF21033_high_2
Description: NF21033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21033_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 43255511 - 43255862
Alignment:
| Q |
18 |
cacacgatgccaagacaagaaagtgaagaaaaggtggttgagnnnnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagag |
117 |
Q |
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| T |
43255511 |
cacaggatgctaagacaagaaagtgaagaaaaggtggttgagtttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggag |
43255610 |
T |
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| Q |
118 |
catatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255611 |
catatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaa |
43255710 |
T |
|
| Q |
218 |
ctcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255711 |
ctcctgtaacaagagcttgaataaagtaacccaatattgccaacattgctaaccttccattcttaacttccttcagctttaattctttcaatgatttctc |
43255810 |
T |
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| Q |
318 |
atctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggt |
369 |
Q |
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| T |
43255811 |
atctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggt |
43255862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 43258777 - 43259128
Alignment:
| Q |
18 |
cacacgatgccaagacaagaaagtgaagaaaaggtggttgagnnnnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagag |
117 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| ||| |
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| T |
43258777 |
cacaagatgctaagacaagaaagtgaagaaaaggtggttgagtttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggag |
43258876 |
T |
|
| Q |
118 |
catatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43258877 |
catatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaa |
43258976 |
T |
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| Q |
218 |
ctcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43258977 |
ctcctgtaacaagagcttgaataaagtaacccaatattgccaacattgctaaccttccattcttaacttccttcagctttaattccttcaatgatttctc |
43259076 |
T |
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| Q |
318 |
atctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggt |
369 |
Q |
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| T |
43259077 |
atctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggt |
43259128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 119 - 369
Target Start/End: Original strand, 43247615 - 43247865
Alignment:
| Q |
119 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
43247615 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtttgaagggtcagccaaatgatttaagaagttttggtatggtccaac |
43247714 |
T |
|
| Q |
219 |
tcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctca |
318 |
Q |
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|| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
43247715 |
tcttgtaactagagcttgaacaaagtaacccaatattgccaacatagctaaccttccattcttaacttccttcagctttaaatccttcaatgatttctca |
43247814 |
T |
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| Q |
319 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43247815 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggt |
43247865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 43233964 - 43234059
Alignment:
| Q |
160 |
aagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatatt |
255 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||| |
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| T |
43233964 |
aagatgttgttgttgaaagggtcagccaaatgatccaagaggttttggtatggtccaactcctgtaacaagagattgaacaaagtcacccagtatt |
43234059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 43254090 - 43254144
Alignment:
| Q |
119 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43254090 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
43254144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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