View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21033_high_3 (Length: 241)
Name: NF21033_high_3
Description: NF21033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21033_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 29078745 - 29078952
Alignment:
| Q |
14 |
cagaaaggtttccatagcatggttccacattactttctttccttttcagttgttcccttgaaccaaactgtggaacaatttttggttttcgtactttcta |
113 |
Q |
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| T |
29078745 |
cagaaaggtttccatggcatggttccacattactttctttccttttcagttgttcccttgaaccaaactgtggaacaatttttggtttccgtactttcca |
29078844 |
T |
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| Q |
114 |
tccacaaccaatctttccttccttaatcttgcaaaccaaacatagcataaatgttatgttatgcacaatagcaacggtgacaaatacactttgaaccttt |
213 |
Q |
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| T |
29078845 |
tccacaaccaatctttccttcctcaatcttggaaaccaaacatagcataaatgttatgttatgcacaatagcaacggtgacaaatacactttgaaccttt |
29078944 |
T |
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| Q |
214 |
aggagaac |
221 |
Q |
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|||||||| |
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| T |
29078945 |
aggagaac |
29078952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 10310144 - 10309979
Alignment:
| Q |
1 |
ctccccagtagcgcagaaaggtttccatagcatggttccacattactttctttccttttcagttgttcccttgaaccaaactgtggaacaatttttggtt |
100 |
Q |
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| T |
10310144 |
ctccccagtagcgcagaaaggtttccatggcatggttccacattactttctttccttttcagttgttcccttgaaccaaactgtggaacaatttttggtt |
10310045 |
T |
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| Q |
101 |
ttcgtactttctatccacaaccaatctttccttccttaatcttgcaaaccaaacatagcataaatg |
166 |
Q |
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| T |
10310044 |
tccatactttccatccacaatcaatctttccttcctcaatcttgcaaaccaaacatagcctaaatg |
10309979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 34515788 - 34515670
Alignment:
| Q |
38 |
ccacattactttctttccttt-tcagttgttcccttgaaccaaactgtggaacaatttttggttttcgtactttctatccacaaccaatctttccttcct |
136 |
Q |
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|||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||| |
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| T |
34515788 |
ccacgttactttctttccattctca-ttgttcccttgaaccaaactgtggaacaattttttgtttctgtgctttccatccacaaccaatctttccttcct |
34515690 |
T |
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| Q |
137 |
taatcttgcaaaccaaacat |
156 |
Q |
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| T |
34515689 |
caatcttgcaaaccaaacat |
34515670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 13196532 - 13196414
Alignment:
| Q |
38 |
ccacattactttctttccttttcagttgttcccttgaaccaaactgtggaacaatttttggttttcgtactttctatccacaaccaatctttccttcctt |
137 |
Q |
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|||| ||||||||||||||| |||||||||| ||| ||||| ||||| ||| ||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
13196532 |
ccaccttactttctttccttgcttattgttcccttaaactaaactctggaaagattgttggttttcgtgctttccatccacaaccaatctttccttcctc |
13196433 |
T |
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| Q |
138 |
aatcttgcaaaccaaacat |
156 |
Q |
| |
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| ||| || |||||||||| |
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| T |
13196432 |
attctcgcgaaccaaacat |
13196414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 24962101 - 24962220
Alignment:
| Q |
38 |
ccacattactttctttccttttcagttgttcccttgaaccaaactgtggaacaatttttggttttcgtactttctatccacaaccaatctttccttcctt |
137 |
Q |
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||||||| ||||||||||| | | |||||||||||||||| | |||||||||||| ||| ||| | | ||||| ||||| |||||||||||||||| |
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| T |
24962101 |
ccacatttctttctttcctctctaattgttcccttgaaccacaatgtggaacaattcttgttttccatgctttccatccattcccaatctttccttcctc |
24962200 |
T |
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| Q |
138 |
aatcttgcaaaccaaacata |
157 |
Q |
| |
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||||||| ||||||||||| |
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| T |
24962201 |
aatcttgagaaccaaacata |
24962220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 34081869 - 34081932
Alignment:
| Q |
38 |
ccacattactttctttccttt-tcagttgttcccttgaaccaaactgtggaacaatttttggttt |
101 |
Q |
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|||||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
34081869 |
ccacataactttctttcctttctca-ttgtttccttgaaccaaactgtggaacaatttttggttt |
34081932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 39144658 - 39144721
Alignment:
| Q |
38 |
ccacattactttctttccttt-tcagttgttcccttgaaccaaactgtggaacaatttttggttt |
101 |
Q |
| |
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|||||| |||||||||||||| ||| || |||||||||||||||||||| ||||||||||||||| |
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| T |
39144658 |
ccacataactttctttcctttctca-ttattcccttgaaccaaactgtgaaacaatttttggttt |
39144721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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