View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21033_low_1 (Length: 627)
Name: NF21033_low_1
Description: NF21033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21033_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 26298144 - 26297537
Alignment:
| Q |
1 |
agagaggaaaataaattaggtaaagtagaagcagatttactaaaggtgaaactagaacttg------------gagaagaagaagatttagttttagaaa |
88 |
Q |
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| T |
26298144 |
agagaggaaaatacattaggtgaagtagaagcagatttactaaaggtgaatctagaacttgaatttgaacttggagaagaagaagatttagttttagaaa |
26298045 |
T |
|
| Q |
89 |
caagagaagcatgatcccaaacccttcttgtagaagaatccaaactcaacctcctcatttcaacattaacaaccacattgttatccttattcccattaga |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26298044 |
caagagaagcatgatcccaaacccttcttgtagaagaatccaaactcaacctcctcatttcaacattaacaaccacattgttatccttattcccatta-- |
26297947 |
T |
|
| Q |
189 |
gtctgacccattaannnnnnncttcttcttaacattaccgttcagtttcaaagctgcaagtcgcaaagaatcagtagaaaccaaatcaacaggattacca |
288 |
Q |
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||| |||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26297946 |
---------att----tttttcttcttcttaacattaccattcagtttcgcagttgcaagtcttaaagaatcagtagaaaccaaatcaacaggattacca |
26297860 |
T |
|
| Q |
289 |
acacaagctcttcttttagaaatagttttcaaaccagaaactcttggaacggaagaggaagcatcgttatcaaagcgagtgacgtaaacgaactgaccga |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26297859 |
acacaagctcttcttttagaaatagttttcaaaccagaaactcttggaacggaagaggaagcatcgttatcaaagcgagtgacgtaaacgaactgaccga |
26297760 |
T |
|
| Q |
389 |
gctggagtttatcagaacggattaactcggcgtcggagtcggagacggagacataagcggagtgaagagagtcggagagtttgagaaagtagccggtggc |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26297759 |
gctggagtttatcagaacggattaactcggcgtcggagtcggagacggagacataagcggagtgaagagagtcggagagtttgagaaagtagccggtggc |
26297660 |
T |
|
| Q |
489 |
gggttgaaatgtgtcttctgaaagacgagggatgatttcagtaacttgaaggagtggttgacggtgggagtttgttgaagtggagttttggagaagtttt |
588 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26297659 |
gggttgaaatgtgtcttctgaaagacgagggatgatttcagttacttgaaggagtggttgacggtgggtgtttgttgaagtggagttttggagaagtttt |
26297560 |
T |
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| Q |
589 |
gagaggactccaggggttagaga |
611 |
Q |
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||||||||||||||||||||||| |
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| T |
26297559 |
gagaggactccaggggttagaga |
26297537 |
T |
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