View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21033_low_2 (Length: 602)

Name: NF21033_low_2
Description: NF21033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21033_low_2
NF21033_low_2
[»] chr8 (2 HSPs)
chr8 (96-168)||(12933811-12933883)
chr8 (108-145)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (96-168)||(14177081-14177153)
chr4 (98-168)||(28608724-28608794)
chr4 (107-160)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (138-175)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (138-175)||(796698-796735)
chr6 (138-175)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (138-175)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 12933883 - 12933811
Alignment:
Q  96 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 168  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933883 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  108 ggttgctccatataaatctcctcttccaaatctccatg 145  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 14177153 - 14177081
Alignment:
Q  96 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 168  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177153 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 28608724 - 28608794
Alignment:
Q  98 aaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 168  Q
    |||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608724 aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  107 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 160  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  138 tctccatgaagaaatgcagttttcacatccaactgctc 175  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  138 tctccatgaagaaatgcagttttcacatccaactgctc 175  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  138 tctccatgaagaaatgcagttttcacatccaactgctc 175  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  138 tctccatgaagaaatgcagttttcacatccaactgctc 175  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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