View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21033_low_3 (Length: 593)

Name: NF21033_low_3
Description: NF21033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21033_low_3
NF21033_low_3
[»] chr8 (2 HSPs)
chr8 (9-159)||(12933811-12933961)
chr8 (99-136)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (9-159)||(14177081-14177231)
chr4 (9-159)||(28608644-28608794)
chr4 (98-151)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (129-166)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (129-166)||(796698-796735)
chr6 (129-166)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (129-166)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 12933961 - 12933811
Alignment:
Q  9 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 107  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  12933961 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 12933863  T
Q  108 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 159  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933862 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  99 ggttgctccatataaatctcctcttccaaatctccatg 136  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  9 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 107  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  108 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 159  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 28608644 - 28608794
Alignment:
Q  9 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 107  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || ||| |||||||||||||||  ||    
T  28608644 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaacc 28608742  T
Q  108 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 159  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608743 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  98 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 151  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  129 tctccatgaagaaatgcagttttcacatccaactgctc 166  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  129 tctccatgaagaaatgcagttttcacatccaactgctc 166  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  129 tctccatgaagaaatgcagttttcacatccaactgctc 166  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  129 tctccatgaagaaatgcagttttcacatccaactgctc 166  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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