View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21033_low_7 (Length: 237)
Name: NF21033_low_7
Description: NF21033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21033_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 47299256 - 47299479
Alignment:
| Q |
1 |
tgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatgtaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatgg |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47299256 |
tgaagcgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatgg |
47299355 |
T |
|
| Q |
101 |
actagagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccatta |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47299356 |
actagagaagcagtatctttttccttaattgtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccatta |
47299455 |
T |
|
| Q |
201 |
aaatctccctattccacacaggtt |
224 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
47299456 |
gaatctccctattccacacaggtt |
47299479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 47292649 - 47292872
Alignment:
| Q |
1 |
tgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatgtaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatgg |
100 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| |||| |
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| T |
47292649 |
tgaagcgataagatcaaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagcgcagctatgtcagaagctctaaagaagaaagatcgatga |
47292748 |
T |
|
| Q |
101 |
actagagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccatta |
200 |
Q |
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| T |
47292749 |
actagagaagcagtatcttcttccttaatggtatttggcgaaaaaatttgtttgtattcaagatggttgcatgtaatgcgtggagggtctcttgccatta |
47292848 |
T |
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| Q |
201 |
aaatctccctattccacacaggtt |
224 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
47292849 |
gaatctccctattccatacaggtt |
47292872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 47267599 - 47267376
Alignment:
| Q |
1 |
tgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatgtaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatgg |
100 |
Q |
| |
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|||||||||||||||||||||||| || || ||||||||||||| ||||||||||||||| | ||||| |||| |||||||||||||||||||| |
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| T |
47267599 |
tgaagtgataagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaacaatgtctgaagtcctaaagaagaaagattgatga |
47267500 |
T |
|
| Q |
101 |
actagagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccatta |
200 |
Q |
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| T |
47267499 |
actagggttgtggtatcttcttccttgattgtatttgacgaaaaaatttgttcgtattcatgatggttgcatgtaatgtgtggtgggtctcttgccatta |
47267400 |
T |
|
| Q |
201 |
aaatctccctattccacacaggtt |
224 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
47267399 |
gaatctccctattccatacaggtt |
47267376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 47242609 - 47242465
Alignment:
| Q |
83 |
aagaagaaagattgatggactagagaagcagtatctttttccttaatg---gtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgc |
179 |
Q |
| |
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|||||||||||||||||||||| || |||||||| ||| || ||| |||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
47242609 |
aagaagaaagattgatggactacgatagtagtatcttcttctttgatgtaggtatttggcgaaagtatttgttcgtattcacgatggttgcatgtaatgt |
47242510 |
T |
|
| Q |
180 |
gtggagggtctcttgccattaaaatctccctattccacacaggtt |
224 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
47242509 |
atggagggtctcttgccattagaatctccctattccatacaggtt |
47242465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 47283560 - 47283362
Alignment:
| Q |
5 |
gtgataagatcgaatgtggtgcattgacgaaggtgaaatgtaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggacta |
104 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||||| || |||| |||| | || ||||||| |||| | |||||||||||||||||||||||| |
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| T |
47283560 |
gtgataagatcaaatgtactgcattgacgaaggtgaaatggaatcaagtgacggattgcagctatgtgagaaagtgtaaagaagaaagattgatggacta |
47283461 |
T |
|
| Q |
105 |
---gagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccatta |
200 |
Q |
| |
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|| ||||| ||||| |||||| || |||||| || ||| |||||||| |||||| ||||||||| |||||||||||||||||||| ||||||| |
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| T |
47283460 |
tggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgttcatattcacgatggttgcaagtaatgcgtggagggtctctagccatta |
47283362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 47256737 - 47256593
Alignment:
| Q |
83 |
aagaagaaagattgatggactagagaagcagtatctttttccttaatg---gtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgc |
179 |
Q |
| |
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|||||||||||||||||||||| | || |||||||| |||||| ||| |||||||||| ||| |||||||| |||||| ||||||||| |||||| |
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| T |
47256737 |
aagaagaaagattgatggactacaatagtagtatcttcttccttgatgtacgtatttggcggaagtatttgttcatattcacgatggttgcaagtaatgt |
47256638 |
T |
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| Q |
180 |
gtggagggtctcttgccattaaaatctccctattccacacaggtt |
224 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
47256637 |
atggagggtctcttgccattagaatctccctattccatacaggtt |
47256593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 47278967 - 47278769
Alignment:
| Q |
5 |
gtgataagatcgaatgtggtgcattgacgaaggtgaaatgtaaccaagagacgaagtgtggctatgtcag-aagctctaaagaagaaagattgatggact |
103 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||| || ||| |||||| |||||| || |||| ||||||||||||| ||||||||| |
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| T |
47278967 |
gtgataagatcaaatgtactgcattgacgaaggtgaaatggaatcaaacgacgaatctcagctatgcgagtaagcg-taaagaagaaagagtgatggact |
47278869 |
T |
|
| Q |
104 |
agagaagcagta---tctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccatta |
200 |
Q |
| |
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| | ||||| | |||| |||||| || |||||| |||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |
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| T |
47278868 |
atggtagcagcaacatcttcttccttgttgatatttgacgaaagtatttgttcgtattcatgatggttgcaagtaacacgtggagggtctcttgccatta |
47278769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 32731357 - 32731136
Alignment:
| Q |
6 |
tgataagatcgaatgtggtgcattgacgaaggtgaaatgtaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactag |
105 |
Q |
| |
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|||||||||| ||||| ||||| ||| ||||||||| || ||||||| ||||| | ||||||| || || | | |||||||||||||||||||||| |
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| T |
32731357 |
tgataagatcaaatgtagtgcaatgatgaaggtgaattggaaccaagcaacgaatcgcagctatgtgagcaggtgtgaagaagaaagattgatggactac |
32731258 |
T |
|
| Q |
106 |
agaagcagtatctttttccttaatg---gtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaa |
202 |
Q |
| |
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|| |||||||| ||| || ||| |||||||||||||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||||| | |
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| T |
32731257 |
gatagtagtatcttcttctttgatgtaggtatttggcgaaagtatttgttcgtattcacgatggttgcatgtaatacatggagggtctcttgccattaga |
32731158 |
T |
|
| Q |
203 |
atctccctattccacacaggtt |
224 |
Q |
| |
|
|||||||||||||| ||||||| |
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|
| T |
32731157 |
atctccctattccatacaggtt |
32731136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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