View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21034_high_4 (Length: 356)
Name: NF21034_high_4
Description: NF21034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21034_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 107 - 345
Target Start/End: Complemental strand, 1940322 - 1940084
Alignment:
| Q |
107 |
ccttaagagaatcacacacagcattgtgttctagaacaaaaagggtctgcaaagttgtgacaccagcccaactattacgaatgtcacctgaaattgctgt |
206 |
Q |
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| T |
1940322 |
ccttaagagaatcacacacagcattgtgttctagaacaaaaagggtctgcaaagttgtgacaccagcccaactattacgaatgtcacctgaaattgctgt |
1940223 |
T |
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| Q |
207 |
tccatcttcattatgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgtccaaaacttcttgattgcttccatat |
306 |
Q |
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| T |
1940222 |
tccatcttcattatgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgtccaaaacttcttgattgcttccatat |
1940123 |
T |
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| Q |
307 |
atcacacttccatccctattatcatatagtttctttcat |
345 |
Q |
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| T |
1940122 |
atcacacttccatccctattatcatatagtttcattcat |
1940084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 107 - 339
Target Start/End: Complemental strand, 1954783 - 1954551
Alignment:
| Q |
107 |
ccttaagagaatcacacacagcattgtgttctagaacaaaaagggtctgcaaagttgtgacaccagcccaactattacgaatgtcacctgaaattgctgt |
206 |
Q |
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| T |
1954783 |
ccttgagagcatcacaaaaagcattgtgttcttgaataaagagagcctgcaaagttgagacaccagcccaactattgcgaacgtcacctgaaattgctac |
1954684 |
T |
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| Q |
207 |
tccatcttcattatgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgtccaaaacttcttgattgcttccatat |
306 |
Q |
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| T |
1954683 |
tccattttcattttgcttaagggtaccatcgtctaatatttttaacttcccatctttgaaagttctcactttgttcaaaacttcttgattgcttccatat |
1954584 |
T |
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| Q |
307 |
atcacacttccatccctattatcatatagtttc |
339 |
Q |
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| T |
1954583 |
atcacacttccatccctattatcatatagtttc |
1954551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 107 - 323
Target Start/End: Complemental strand, 1925995 - 1925776
Alignment:
| Q |
107 |
ccttaagagaatcacacacagcattgtgttctagaacaaaaagggtctgcaaagttgtgacaccagcccaactattacgaatgtcacctgaaattgctgt |
206 |
Q |
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|||| |||| |||||| ||||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||| |||| |||||||||||||| |
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| T |
1925995 |
ccttgagagcatcacaaacagcattgtgttcttgaatgaaaagggcttgcaaagttgaaacaccagcccaactattgcgaacatcacctgaaattgcaac |
1925896 |
T |
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| Q |
207 |
tccatcttcattatgaagaagttca---ccttcctttgatattttgattttaccatctttgaaagtcctcactttgtccaaaacttcttgattgcttcca |
303 |
Q |
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| T |
1925895 |
tccatcttcgttttgtagaagatgatttccttcctttgatatttttaacttcccatcttgggaagtcctcacttgggtcaaaatttcatcattgcttcca |
1925796 |
T |
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| Q |
304 |
tatatcacacttccatccct |
323 |
Q |
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|||||||||||||||||||| |
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| T |
1925795 |
tatatcacacttccatccct |
1925776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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