View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21034_low_1 (Length: 430)
Name: NF21034_low_1
Description: NF21034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21034_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 1961842 - 1961593
Alignment:
| Q |
1 |
agactagaactcattgcaaagcaaggatttcagatgtattagagaatgaaaagtttgtcatccatgaatttgttgatgaccttaaccacttaatactcta |
100 |
Q |
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| T |
1961842 |
agactagaactcattgcaaagcaaggatttcagatgtattagagaatgaaaagtttgtcatccatgaatttgttgattaccttaaccacttaatactcta |
1961743 |
T |
|
| Q |
101 |
caacttttagagacaacattgtcattttgctgtaattttgggatgcatgatagcagtgtaatacctatttaaccgttatcatcaagttgctttgtggatt |
200 |
Q |
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| T |
1961742 |
caacttttagagacaacattgtcattttgctgtaattttgggatgcatgatagcagtgtaatacctatttaaccgttatcatcaagttgctttgtggatt |
1961643 |
T |
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| Q |
201 |
ttccaatgtagctagcaatggtattgattataacaattaaatgtgcatct |
250 |
Q |
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| T |
1961642 |
ttccaatgtagctagcaatggtattgattataacaattaaatgtgcatct |
1961593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 246 - 411
Target Start/End: Complemental strand, 1961221 - 1961054
Alignment:
| Q |
246 |
catctatcacacaatgctcatttataaatagtatcacaaattgtattacatagaaaatacttgaacttacaagtcacttgctacttgatacaactattta |
345 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961221 |
catcaatcacacaatgctcatttataaatagtatcacaaattgtattacatagaaaatacttgaacttacaagtcacttgctacttgatacaactattta |
1961122 |
T |
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| Q |
346 |
ttacaatgtcacctacattacattgaacattcactcattgaact--actttgtaatgaccacagtcta |
411 |
Q |
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| T |
1961121 |
ttacaatgtcacctacattacattgaacattcactcattgaactacactttgtaatgaccacagtcta |
1961054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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