View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21034_low_2 (Length: 424)
Name: NF21034_low_2
Description: NF21034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21034_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 190 - 414
Target Start/End: Original strand, 14810498 - 14810722
Alignment:
| Q |
190 |
taatgaacatggttggtcccgcatggttcctgcccgatattttttgagttacttttgtttttggaactggcctaccctactctttttcattggcaattaa |
289 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14810498 |
taatgaacatggttggtcccgcatgattcctgcccgatattttttgagttacttttgtttttggcactggcctaccctactctttttcattggcaattaa |
14810597 |
T |
|
| Q |
290 |
gaattatcctttttgtttgtactattagcgataacgataccttaaattaatggcttaataatcaagacaagattatattttgtcatgaaccaggccttga |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14810598 |
gaattatcctttttgtttgtactattagcgataacgataccttaaattaatggcttaataatcaagacaagattatattttgtcatgaaccaagccttga |
14810697 |
T |
|
| Q |
390 |
cgaggtaaaatgtttgtgggttcat |
414 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14810698 |
cgaggtaaaatgtttgtgggttcat |
14810722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 20700186 - 20700351
Alignment:
| Q |
1 |
tcactataacgactttgcagttgtttttactaggcatcaagcaaacggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtatt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||| | |
|
|
| T |
20700186 |
tcactataacgactttgtagttgtttttactaggcgtcaagcaaacggtagtgctcatgttctttcacaagaagccttatcccatgcttcacgcagtact |
20700285 |
T |
|
| Q |
101 |
tttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
166 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20700286 |
tttgatgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
20700351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 14810315 - 14810480
Alignment:
| Q |
1 |
tcactataacgactttgcagttgtttttactaggcatcaagcaaacggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtatt |
100 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| || || | |
|
|
| T |
14810315 |
tcactataacaactttgtagttgtttttactaggcgtcaggcaaacggtagcgctcatgctcttgcacgagaagccttatctcatgcttcacacaatact |
14810414 |
T |
|
| Q |
101 |
tttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
166 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
14810415 |
tttgatgtaattcttttttgtattgctactattattatgaatgagacaccttaaatttgtttgctt |
14810480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 18587903 - 18587740
Alignment:
| Q |
1 |
tcactataacgactttgcagttgtttttactaggcatcaagcaaacggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtatt |
100 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| | || |||||| ||||||||||||||||| ||||| | || |||||||| |||||| ||||| | |
|
|
| T |
18587903 |
tcactattacgactttgtagttgtttttactaggcgtaaaacaaacgatagcgctcatgctcttgtacgagcaaccctatcccatacttcacacagtact |
18587804 |
T |
|
| Q |
101 |
tttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgc |
164 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18587803 |
tttgatgtaattcccttttgtattgctactattattatgaatgaatcaccttaaatttgcttgc |
18587740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 42563159 - 42563038
Alignment:
| Q |
43 |
aaacggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaat |
142 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||||||||||| | |||| |||||||||||||||| | ||||||||| ||||| ||||||| |
|
|
| T |
42563159 |
aaacggtagcgctcatgctctcacatgagcagccttatcccatgcttcaggaagtacttttgatgtaatttctcctagtattgctattattactatgaat |
42563060 |
T |
|
| Q |
143 |
gaaacaccttaaatttgcttgc |
164 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
42563059 |
aaaagaccttaagtttgcttgc |
42563038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 26642640 - 26642710
Alignment:
| Q |
76 |
cttatcccatgcttcacgcagtatttttgatgtaatttctttttgtattgctactattattatgaatgaaa |
146 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||| |||| |||||| ||||||| |
|
|
| T |
26642640 |
cttatcccatgcttcacgcaatatttttgatgtaatttcaagatgtattgcaactaatattattaatgaaa |
26642710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 29575560 - 29575398
Alignment:
| Q |
1 |
tcactataacgactttgcagttgtttttactaggcatcaagcaaacggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtatt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29575560 |
tcactataacgactttgtagttgtttttactaggcgtcaagcaaatggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtact |
29575461 |
T |
|
| Q |
101 |
tttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttg |
163 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29575460 |
tttgttgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttg |
29575398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 26000777 - 26000817
Alignment:
| Q |
50 |
agcgctcatgctcttgcacgagaagccttatcccatgcttc |
90 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| |||| |
|
|
| T |
26000777 |
agcgctcatgctcttgcacgagtagtcttatcccatacttc |
26000817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 13010309 - 13010144
Alignment:
| Q |
1 |
tcactataacgactttgcagttgtttttactaggcatcaagcaaacggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtatt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| | |
|
|
| T |
13010309 |
tcactataacgactttgtagttgtttttactaggcgtcaaggaaacggtagcgcccatgctcttgcacgagaagtcttatcccatgtttcacgcagtact |
13010210 |
T |
|
| Q |
101 |
tttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
166 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13010209 |
tttgatgtaattcctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
13010144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 34693082 - 34693235
Alignment:
| Q |
12 |
actttgcagttgtttttactaggcatcaagcaaacggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtatttttgatgtaat |
111 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34693082 |
actttgtagttgtttttacttggcgtcaagcaaacagtagcgttcatgctcttgtacgagaaaccttatcccatgcttcacgcagtacttttgatgtaat |
34693181 |
T |
|
| Q |
112 |
ttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgct |
165 |
Q |
| |
|
| |||||||||| | ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34693182 |
tcctttttgtatcgttactattattatgaatgaaacaccttaaatttgtttgct |
34693235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 18657155 - 18656994
Alignment:
| Q |
5 |
tataacgactttgcagttgtttttactaggcatcaagcaaacggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtatttttg |
104 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| || ||||| |
|
|
| T |
18657155 |
tataacgaatttgtagttgtttttactaggcgtcaagcaaacggtagcgctcatgctcttgcacgataagcattagcccatgcttcacgcattacttttg |
18657056 |
T |
|
| Q |
105 |
atgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
166 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18657055 |
atgtaattcctttttgtattgctactattattatgaatgaaacatcttaaatttgcttgctt |
18656994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 3230592 - 3230751
Alignment:
| Q |
7 |
taacgactttgcagttgtttttactaggcatcaagcaaacggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtatttttgat |
106 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||| | |||||||||||||||||| | || ||||||| |
|
|
| T |
3230592 |
taacaactttgtagttgtttttattaggcatcaagcaaacaagagcgttcatgctcttgcacgaacaaccttatcccatgcttcacataatacttttgat |
3230691 |
T |
|
| Q |
107 |
gtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgcttgctt |
166 |
Q |
| |
|
|||||| || ||||||||||| ||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
3230692 |
gtaattctttcttgtattgctaatattattatgaatgaaacatcgtaagtttgcttgctt |
3230751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 20948562 - 20948685
Alignment:
| Q |
21 |
ttgtttttactaggcatcaagcaaacggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtatttttgatgtaatttctttttg |
120 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |||||| ||| ||| |||||||||||||| |||| ||| |||||||||||| | ||| |
|
|
| T |
20948562 |
ttgtttttgttaggcgtcaagcaaacggtagcgctcatgtacttgcaagagcagctttatcccatgcttctcgcattatatttgatgtaattcttgattg |
20948661 |
T |
|
| Q |
121 |
tattgctactattattatgaatga |
144 |
Q |
| |
|
||||| | ||||| |||||||||| |
|
|
| T |
20948662 |
tattgattctattcttatgaatga |
20948685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 9680275 - 9680402
Alignment:
| Q |
19 |
agttgtttttactaggcatcaagcaaacggtagcgctcatgctcttgcacgagaagccttatcccatgcttcacgcagtatttttgatgtaatttctttt |
118 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |||||||||||||||||| || | | ||||| ||||||||| |||||||||||||||||||| | | |
|
|
| T |
9680275 |
agttgtgtttactaggcgtcaagcaaacggaagcgctcatgctcttgcaaaagcaactttatctcatgcttcaagcagtatttttgatgtaattccaagt |
9680374 |
T |
|
| Q |
119 |
tgtattgctactattattatgaatgaaa |
146 |
Q |
| |
|
| |||||||||||||||| | ||||||| |
|
|
| T |
9680375 |
tatattgctactattatttttaatgaaa |
9680402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 41687281 - 41687154
Alignment:
| Q |
19 |
agttgtttttactaggcatcaagcaaacggtagcgctcatgctcttgcacgaga-agccttatcccatgcttcacgcagtatttttgatgtaatttcttt |
117 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |||||||||||||||||| ||| ||| ||||| |||||||||| || |||||||||||||||| | |
|
|
| T |
41687281 |
agttgtgtttactaggcgtcaagcaaacggaagcgctcatgctcttgca-aagacagctttatctcatgcttcacacaatatttttgatgtaattccaag |
41687183 |
T |
|
| Q |
118 |
ttgtattgctactattattatgaatgaaa |
146 |
Q |
| |
|
|| |||||||||||||||| | ||||||| |
|
|
| T |
41687182 |
ttttattgctactattatttttaatgaaa |
41687154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 11737801 - 11737681
Alignment:
| Q |
26 |
tttactaggcatcaagcaaacggtagcgctcatgctcttgcacgaga-agccttatcccatgcttcacgcagtatttttgatgtaatttctttttgtatt |
124 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||| | ||| | | ||||| ||||||||||||| |||||||||||||||| | ||||||| |
|
|
| T |
11737801 |
tttactaggcgtcaagcaaacggaagcgctcatgctcttgtaa-agacaactttatctcatgcttcacgcattatttttgatgtaattccaagttgtatt |
11737703 |
T |
|
| Q |
125 |
gctactattattatgaatgaaa |
146 |
Q |
| |
|
||||||||||| | ||||||| |
|
|
| T |
11737702 |
actactattatttttaatgaaa |
11737681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 47244908 - 47244846
Alignment:
| Q |
100 |
ttttgatgtaatttctttttgtattgctactattattatgaatgaaacaccttaaatttgctt |
162 |
Q |
| |
|
|||||||| |||| || ||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47244908 |
ttttgatgcaattctttcttgtactgctactattattatgaatgaaacaccttaagtttgctt |
47244846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 47244711 - 47244673
Alignment:
| Q |
124 |
tgctactattattatgaatgaaacaccttaaatttgctt |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47244711 |
tgctactattattatgaatgaaacaccttaagtttgctt |
47244673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 14835539 - 14835511
Alignment:
| Q |
118 |
ttgtattgctactattattatgaatgaaa |
146 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14835539 |
ttgtattgctactattattatgaatgaaa |
14835511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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