View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21034_low_3 (Length: 378)
Name: NF21034_low_3
Description: NF21034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21034_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 41102107 - 41101760
Alignment:
| Q |
18 |
tgtccaccatctgttgcaatacctgaaaagtactccaggtcaaggcattctttttccagctacccaatctctcaaagttactgtctatgtggacgcggat |
117 |
Q |
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| T |
41102107 |
tgtccaccatctgttgcaatacctgaaaagtactccaggtcaaggcattctttttccagctacccaatctctcaaagttactgtctatgtggacgcggat |
41102008 |
T |
|
| Q |
118 |
tggcacagttgccaagtttctcgataatccacaaccagttattgcatgactccatgatatctttgaaatcctagaagcaagctattgatgctctcttttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41102007 |
tggcacagttgccaagtttctcgataatccacaaccagttattgcatgactccatgatatctttgaaatcctagaagcaagctactgatgctctcttttc |
41101908 |
T |
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| Q |
218 |
cacagaggctgaatacaaggccattgcaaccctcacatctgagttattcaagcattgtattttgtgatagtcaaagtggcatccaacttgccaagaacgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41101907 |
cacagaggctgaatacaaggccattgcaaccctcacatctgagttattcaagcattgtattttgtgatagtcaaagtggcatccaacttgccaagaacgt |
41101808 |
T |
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| Q |
318 |
tccaaacatatcaacttcaattgtgattttatcctggaatatgtttgt |
365 |
Q |
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| T |
41101807 |
tccaaacatatcaacttcaattgtgattttatcctggaatatgtttgt |
41101760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 155 - 265
Target Start/End: Complemental strand, 41080573 - 41080463
Alignment:
| Q |
155 |
gttattgcatgactccatgatatctttgaaatcctagaagcaagctattgatgctctcttttccacagaggctgaatacaaggccattgcaaccctcaca |
254 |
Q |
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| T |
41080573 |
gttattgcatgacttcatgatagcttggaaatccaagaagcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcaca |
41080474 |
T |
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| Q |
255 |
tctgagttatt |
265 |
Q |
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||||||||||| |
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| T |
41080473 |
tctgagttatt |
41080463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 365
Target Start/End: Complemental strand, 41091775 - 41091658
Alignment:
| Q |
264 |
ttcaagcattgtattttgtgatagtcaaagtggcatccaacttgc----------------caagaacgttccaaacatatcaacttcaattgtgatttt |
347 |
Q |
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| T |
41091775 |
ttcaagcattgtattttgtgatagtcaaagtggcatccaacttgcaactaagcccatttgccaagaacgttacaaacatatcgacttcgattgtgatttt |
41091676 |
T |
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| Q |
348 |
atcctggaatatgtttgt |
365 |
Q |
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|||| ||||||||||||| |
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| T |
41091675 |
atccgggaatatgtttgt |
41091658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 41080421 - 41080376
Alignment:
| Q |
263 |
attcaagcattgtattttgtgatagtcaaagtggcatccaacttgc |
308 |
Q |
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| T |
41080421 |
attcaagcattgtattttgtgatagtcaaagtggcacccaacttgc |
41080376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 263
Target Start/End: Complemental strand, 41091950 - 41091815
Alignment:
| Q |
127 |
tgccaagtttctcgataatccacaaccagttattgcatgactccatgatatctttgaaatcctagaagcaagctattgatgctctcttttccacagaggc |
226 |
Q |
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| T |
41091950 |
tgccaagtttcttaaaaattcacaaccacttattgcat-atttcttgatagcttggaaaccgaagaagtaaactattgttgctcgctcttctgcagaggc |
41091852 |
T |
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| Q |
227 |
tgaatacaaggccattgcaaccctcacatctgagtta |
263 |
Q |
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|||||| | ||||||||| ||||||||||||||||| |
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| T |
41091851 |
tgaatagagggccattgctgccctcacatctgagtta |
41091815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 4133236 - 4133348
Alignment:
| Q |
23 |
accatctgttgcaatacctgaaaagtactccaggtcaaggcattctttttccagctacccaatctctcaaagttactgtctatgtggacgcggattggca |
122 |
Q |
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||||| |||| |||||||||||| || || ||||||||||||| ||||||| || | |||||||||||||||| | |||||| |||| ||||||| |
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| T |
4133236 |
accatttgttacaatacctgaaaggt---cccggtcaaggcattccttttccatctttctaatctctcaaagttaccgcctatgtagacgtggattgggg |
4133332 |
T |
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| Q |
123 |
cagttgccaagtttct |
138 |
Q |
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||| |||||||||||| |
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| T |
4133333 |
cagctgccaagtttct |
4133348 |
T |
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