View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21034_low_5 (Length: 346)

Name: NF21034_low_5
Description: NF21034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21034_low_5
NF21034_low_5
[»] chr8 (12 HSPs)
chr8 (1-346)||(1797309-1797654)
chr8 (32-202)||(5203860-5204030)
chr8 (32-198)||(6230302-6230468)
chr8 (210-317)||(5203688-5203795)
chr8 (41-202)||(5174711-5174872)
chr8 (217-317)||(5193450-5193550)
chr8 (213-317)||(6230126-6230230)
chr8 (32-202)||(5193610-5193780)
chr8 (92-148)||(5183348-5183404)
chr8 (210-316)||(5174540-5174646)
chr8 (143-202)||(5170507-5170566)
chr8 (32-70)||(5183429-5183467)
[»] chr7 (3 HSPs)
chr7 (32-317)||(5177098-5177386)
chr7 (37-202)||(8552818-8552983)
chr7 (211-317)||(8553022-8553128)
[»] chr4 (2 HSPs)
chr4 (107-202)||(49610752-49610847)
chr4 (212-304)||(49610620-49610712)
[»] chr6 (1 HSPs)
chr6 (213-317)||(16472251-16472354)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 1797309 - 1797654
Alignment:
Q  1 tggaaacagttcaagaaaccannnnnnnnggaaatatttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataa 100  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  1797309 tggaaacagttcaagaaaccattttttttggaaatatttcaaattttggcatctatcaaaatcaatcttatatggtgaaaaaaaatcatccggacaataa 1797408  T
Q  101 caaagtttctcaagatacggggcatcaatatatacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1797409 caaagtttctcaagatacggggcatcaatatatacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttca 1797508  T
Q  201 tgtcgacaaacttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1797509 tgtcgacaaacttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacag 1797608  T
Q  301 tactcttaatgagaaaataccctacaatctttatatgatctctgct 346  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  1797609 tactcttaatgagaaaataccctacaatctttatatgatttctgct 1797654  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 5204030 - 5203860
Alignment:
Q  32 aaatatttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatat 131  Q
    |||||||||||||||||||| |||||||||||||||||| | ||||        ||| | ||||||||||||| |||||||||| |||||||||||||||    
T  5204030 aaatatttcaaattttggcacctatcaaaatcaatcttaaacggtgcgtcaaaatcaccaggacaataacaaaatttctcaagacacggggcatcaatat 5203931  T
Q  132 atacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 202  Q
    | |||||||| ||||||| ||||||||||||||| | ||||||||||||||||||  ||||||||||||||    
T  5203930 aaacctcctgtattccttgaacatcaactgtcttcaacttaagtagaccatgcatattcaaagacttcatg 5203860  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 6230468 - 6230302
Alignment:
Q  32 aaatatttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatat 131  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||        | | | ||||||||||  | |||||| ||| |||||| ||||||||    
T  6230468 aaatatttcaaattttggcatctatcaaaatcaatcttaaatggtgcgtcaaaataaccaggacaataacgtaatttctcgagagacggggaatcaatat 6230369  T
Q  132 atacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagactt 198  Q
    | ||||| || ||||||| ||||||||| ||||| | |||||||||||||| ||| |||||||||||    
T  6230368 aaacctcttgtattccttgaacatcaaccgtcttcaacttaagtagaccatccatactcaaagactt 6230302  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 5203795 - 5203688
Alignment:
Q  210 acttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaa 309  Q
    ||||||||||||||||||||||||| |||||||||||||| | ||| |||||| ||||||| ||| |||||| |||| |||||||||||| |||| ||||    
T  5203795 acttcaaagttatatgttcaatcaaaggacaacaagaaatgagatgctcaattgcatgttcatctctcgaaaggacagcccacaatgacaatacttttaa 5203696  T
Q  310 tgagaaaa 317  Q
     |||||||    
T  5203695 cgagaaaa 5203688  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 5174872 - 5174711
Alignment:
Q  41 aaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatatatacctcct 140  Q
    ||||||| ||| || ||||||||||||||| ||||||        ||| | |||||||||||||  ||||||||| |||||||||||||||| ||||| |    
T  5174872 aaatttttgcacctttcaaaatcaatcttaaatggtgcgtcaaaatcaccaggacaataacaaaaattctcaagacacggggcatcaatataaacctctt 5174773  T
Q  141 ggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 202  Q
    | ||||||| ||||||||||||||| |||||   || |||| ||||||||||||| ||||||    
T  5174772 gtattccttgaacatcaactgtcttcagctttgataaaccacgcatgctcaaagatttcatg 5174711  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 5193550 - 5193450
Alignment:
Q  217 agttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaatgagaaa 316  Q
    |||||||||||||||||| |||||||||||||| | |||||| ||| ||||||||||| ||  || |||| |||||||||||| |||||||| |||||||    
T  5193550 agttatatgttcaatcaaaggacaacaagaaatgagatgttcgattgcatgttcgtctctcacaaggacaccccacaatgacaatactcttagtgagaaa 5193451  T
Q  317 a 317  Q
    |    
T  5193450 a 5193450  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 6230230 - 6230126
Alignment:
Q  213 tcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaatga 312  Q
    ||||||||||||||||||| || |||||||||||||| | |||||||||| ||||||||||| | |||| ||||| |  |||||||| || |||||||||    
T  6230230 tcaaagttatatgttcaattaaaggacaacaagaaatgagatgttcaattgcatgttcgtctctggaaaggacatgcttcaatgacaatattcttaatga 6230131  T
Q  313 gaaaa 317  Q
    |||||    
T  6230130 gaaaa 6230126  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 5193780 - 5193610
Alignment:
Q  32 aaatatttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatat 131  Q
    |||||||||||||||||||| |||||||||||||||||| |||||         | | | ||||||||| | | |||||||||| ||||||| ||||| |    
T  5193780 aaatatttcaaattttggcacctatcaaaatcaatcttaaatggttcgtcaaaataaccaggacaataaaataatttctcaagacacggggcgtcaatgt 5193681  T
Q  132 atacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 202  Q
    | | ||| || ||||||  ||||||||| ||||| | |||||||||||||  ||| |||||||||||||||    
T  5193680 aaatctcttgtattcctcgaacatcaaccgtcttcaacttaagtagaccaaccatactcaaagacttcatg 5193610  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 5183404 - 5183348
Alignment:
Q  92 ggacaataacaaagtttctcaagatacggggcatcaatatatacctcctggattcct 148  Q
    |||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||    
T  5183404 ggactataacaaaatttctcaagatactgggcatcaatataaacctcctggattcct 5183348  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 5174646 - 5174540
Alignment:
Q  210 acttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaa 309  Q
    ||||||||||||||||||||||||| ||||||| |||||| | ||  |||||| |||| || | ||   ||| ||| ||||||||||||| |||||| ||    
T  5174646 acttcaaagttatatgttcaatcaaaggacaacgagaaatcagattctcaattgcatgctcatattcacaaaggacctcccacaatgacaatactctcaa 5174547  T
Q  310 tgagaaa 316  Q
    |||||||    
T  5174546 tgagaaa 5174540  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 5170566 - 5170507
Alignment:
Q  143 attccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 202  Q
    ||||||| ||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||    
T  5170566 attccttgaacatcaactgtctttagctttagtaggccatgtatgctcaaagatttcatg 5170507  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 5183467 - 5183429
Alignment:
Q  32 aaatatttcaaattttggcatctatcaaaatcaatctta 70  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  5183467 aaatatttcaaattttggcatctatcaaaaacaatctta 5183429  T

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Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 32 - 317
Target Start/End: Complemental strand, 5177386 - 5177098
Alignment:
Q  32 aaatatttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatat 131  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||        ||||| |||||| |||  | ||||||||||||||||||||||||||    
T  5177386 aaatatttcaaattttggcatctatcgaaaccaatcttatatggtgcgaaaaaatcatcgggacaaaaacgcaatttctcaagatacggggcatcaatat 5177287  T
Q  132 atacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttca---tgtcgacaaacttcaaagttatatgttc 228  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||| ||||||||||||||||    
T  5177286 atacctcctggattccttcaactttaactgtcttgagcttaagtagaccatgaatgctcaaagacttcatgttgtcgacaaacctcaaagttatatgttc 5177187  T
Q  229 aatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaatgagaaaa 317  Q
    |||||| |||||||||||||| | |||||||||| ||| ||||||| | |||| ||||| |  ||||||||  ||||||||||||||||    
T  5177186 aatcaaaggacaacaagaaatgagatgttcaattgcattttcgtctctagaaaggacatgcttcaatgacaaaactcttaatgagaaaa 5177098  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 8552818 - 8552983
Alignment:
Q  37 tttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatatatacc 136  Q
    ||||||||||  ||| |||||||||| ||||||||||||||         ||||  |||||||| | || | |||||||   ||| |||| |||||||||    
T  8552818 tttcaaatttctgcaactatcaaaatgaatcttatatggtgcgttcaaaacatcatgacaataatatagatactcaagacttgggacatctatatatacc 8552917  T
Q  137 tcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 202  Q
    || || ||||| | |||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  8552918 tcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatg 8552983  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 8553022 - 8553128
Alignment:
Q  211 cttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaat 310  Q
    ||||||||||||||||||||| || |||||||||||||| | ||| |||||| ||||||| |||| | |||  |||  ||||||||||| |||||| |||    
T  8553022 cttcaaagttatatgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgttcatcttccaaaagaacaatccacaatgacaatactctcaat 8553121  T
Q  311 gagaaaa 317  Q
    || ||||    
T  8553122 gaaaaaa 8553128  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 49610847 - 49610752
Alignment:
Q  107 ttctcaagatacggggcatcaatatatacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 202  Q
    ||||||||| | |||||||| | ||| ||||| || ||||||| |||||||||||||||||||||  |||||||| ||||||||||| ||||||||    
T  49610847 ttctcaagacatggggcatcgacataaacctcttgtattccttgaacatcaactgtcttgagctttggtagaccaagcatgctcaaacacttcatg 49610752  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 49610712 - 49610620
Alignment:
Q  212 ttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtact 304  Q
    ||||||||||||||||||||||| |||||||||||||| | |||||||||| |||| || | |  | ||| ||| ||||||||||||| ||||    
T  49610712 ttcaaagttatatgttcaatcaaaggacaacaagaaatgagatgttcaattgcatgctcatttcccaaaaggacttcccacaatgacaatact 49610620  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 16472354 - 16472251
Alignment:
Q  213 tcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaatga 312  Q
    |||||||||||||||||||||| ||||||  |||||| || || |||||| |||||| |||| |||||| ||||   || ||||||| |||||| |||||    
T  16472354 tcaaagttatatgttcaatcaaaggacaatgagaaatgaattgctcaattgcatgtt-gtctctcgaaaggacacaacataatgacaatactctcaatga 16472256  T
Q  313 gaaaa 317  Q
    |||||    
T  16472255 gaaaa 16472251  T

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