View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21035_high_5 (Length: 306)
Name: NF21035_high_5
Description: NF21035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21035_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 3573984 - 3573721
Alignment:
| Q |
15 |
cttagcagcaacttcttgaatttcttgtggtgaaagagattggtaaccatgaaaagctacattgatggtaagaggtgtgttagggaaattgaaactagca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| |
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| T |
3573984 |
cttagcagcaacttcttgaatttcttgtggtgaaagagattggtaaccatgaaaagctacattgatggtaaaaggtgtattagggaaattgaaacttgca |
3573885 |
T |
|
| Q |
115 |
tgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaaccatattctctccctgctatttggaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
3573884 |
tgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaaccatattctctcacgactatttggaa |
3573785 |
T |
|
| Q |
215 |
gcctaatttcagacacccattttccccattttctcttcctcacccctctatacatcttatcatt |
278 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573784 |
gcctaatttcagatacccattttccccattttctcttcctcacccctctatacatcttatcatt |
3573721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 3589285 - 3589017
Alignment:
| Q |
15 |
cttagcagcaacttcttgaatttcttgtggtgaaagagattggtaacca------tga---aaagctacattgatggtaagaggtgtgttagggaaattg |
105 |
Q |
| |
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|||||||||||| |||||||| |||| ||||||||||||||| | |||| ||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
3589285 |
cttagcagcaacgtcttgaatctcttctggtgaaagagattgatgaccaacaccatgattcacagctacattgatggtaagaggtgtgttagggaaattg |
3589186 |
T |
|
| Q |
106 |
aaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaaccatattctctccctgc |
205 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3589185 |
aaacttgcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaaccatattctctccctac |
3589086 |
T |
|
| Q |
206 |
tatttggaagcctaatttcagacacccattttccccattttctcttcctcacccctctatacatcttat |
274 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3589085 |
tatttggaagcctaatttcagatacccattttccccattttctcttcctcacccctctatacatcttat |
3589017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 63 - 275
Target Start/End: Complemental strand, 3562692 - 3562480
Alignment:
| Q |
63 |
atgaaaagctacattgatggtaagaggtgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgct |
162 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3562692 |
atgaaaaactaaattgatggtaagaggtgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgct |
3562593 |
T |
|
| Q |
163 |
ttttcttgtgtgtcatatgatcctaaccatattctctccctgctatttggaagcctaatttcagacacccattttccccattttctcttcctcacccctc |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3562592 |
ttttcttgtgtgtcatatgatcctaaccatattctctccctactatttggaagcctaatttcagatacccattttccccattttctcttcctcacccctt |
3562493 |
T |
|
| Q |
263 |
tatacatcttatc |
275 |
Q |
| |
|
| ||||||||||| |
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|
| T |
3562492 |
tgtacatcttatc |
3562480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 69 - 274
Target Start/End: Complemental strand, 3551512 - 3551307
Alignment:
| Q |
69 |
agctacattgatggtaagaggtgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttct |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||| |
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| T |
3551512 |
agctacattgatggtaagaggtgtgttagggaaattgaaacttgcatgaggaccacgtagacaataaagggctgcatcaaatgctcttgctgctttctct |
3551413 |
T |
|
| Q |
169 |
tgtgtgtcatatgatcctaaccatattctctccctgctatttggaagcctaatttcagacacccattttccccattttctcttcctcacccctctataca |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| || || | |
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| T |
3551412 |
tgtgtgtcatatgatcctaaccatattctctccctactatttggaagcctaatctcagatacccattttccccaatttctcttcctcacccccctgtata |
3551313 |
T |
|
| Q |
269 |
tcttat |
274 |
Q |
| |
|
|||||| |
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|
| T |
3551312 |
tcttat |
3551307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 40396237 - 40396185
Alignment:
| Q |
209 |
ttggaagcctaatttcagacacccattttccccattttctcttcctcacccct |
261 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| | ||||| |||||||||| |
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|
| T |
40396237 |
ttggtagcctaatttcagcaacccattttccccaatgtctctgcctcacccct |
40396185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 10025424 - 10025200
Alignment:
| Q |
15 |
cttagcagcaacttcttgaatttcttgtggtgaaagagattggt-aaccatgaaaagctacattgatggtaagaggtgtgttagggaaattgaaactagc |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10025424 |
cttagcagcaacttcttgaatctcttgtggtgaaagagattggttaaccatgaaaagctacattgatggtaagaggtgtattagggaaattgaaactagc |
10025325 |
T |
|
| Q |
114 |
atgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaaccatattctctccctgctatttgga |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |
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| T |
10025324 |
atgaggaccacgtagacaatatagggctgcatcaaatgctctagctgctttttcttgtgtgtcatgtgatcctaaccatattctctcacgactatttgga |
10025225 |
T |
|
| Q |
214 |
agcctaatttcagacacccattttc |
238 |
Q |
| |
|
|||||||||||||| |||||||||| |
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| T |
10025224 |
agcctaatttcagatacccattttc |
10025200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 48645655 - 48645819
Alignment:
| Q |
85 |
agaggtgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatc |
184 |
Q |
| |
|
|||||||| | | ||||||||||| | |||||| ||||||| |||||||| || || ||||||||||| |||||||||| || || |||||||||| |
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| T |
48645655 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccacgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
48645754 |
T |
|
| Q |
185 |
ctaaccatattctctccctgctatttggaagcctaatttcagacacccattttccccattttctc |
249 |
Q |
| |
|
||||||||||||| || | |||||||| ||||| |||||||| |||||||||||||| |||||| |
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|
| T |
48645755 |
ctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctc |
48645819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 48654068 - 48654232
Alignment:
| Q |
85 |
agaggtgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatc |
184 |
Q |
| |
|
|||||||| | | ||||||||||| | |||||| ||||||| |||||||| || || ||||||||||| |||||||||| || || |||||||||| |
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| T |
48654068 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccacgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
48654167 |
T |
|
| Q |
185 |
ctaaccatattctctccctgctatttggaagcctaatttcagacacccattttccccattttctc |
249 |
Q |
| |
|
||||||||||||| || | |||||||| ||||| |||||||| |||||||||||||| |||||| |
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|
| T |
48654168 |
ctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctc |
48654232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 18735900 - 18735994
Alignment:
| Q |
174 |
gtcatatgatcctaaccatattctctccctgctatttggaagcctaatttcagacacccattttccccattttctcttcctcacccctctataca |
268 |
Q |
| |
|
|||||| || |||||||||||||||| | ||| ||||| ||||| ||||| ||||| |||| ||||| ||||||||||| || |||||||||| |
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|
| T |
18735900 |
gtcataggaacctaaccatattctctggcggctgtttggcagcctgatttctgacacatatttcccccactttctcttccttactcctctataca |
18735994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 18733341 - 18733425
Alignment:
| Q |
184 |
cctaaccatattctctccctgctatttggaagcctaatttcagacacccattttccccattttctcttcctcacccctctataca |
268 |
Q |
| |
|
|||||||||||||| | | ||| ||||| || || ||||||||||| | ||||||||||| |||||||| || |||||||||| |
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| T |
18733341 |
cctaaccatattctttggcggctgtttggtagtctgatttcagacacatactttccccatttcctcttccttactcctctataca |
18733425 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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