View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21035_high_6 (Length: 303)
Name: NF21035_high_6
Description: NF21035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21035_high_6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 36 - 303
Target Start/End: Complemental strand, 13005326 - 13005059
Alignment:
| Q |
36 |
gtgatccttaatttttctttttcccaacagtttaacttgctaatattatccatacccaactaccagtcaatgcaactgcagtgcaaagtacttagtctaa |
135 |
Q |
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| T |
13005326 |
gtgatccttaatttttctttttcccaacagtttaacttgctaatattatccatacccaactaccagtcaatgcaactgcagtgcaaagtacttagtctaa |
13005227 |
T |
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| Q |
136 |
ctaccttaacattttctatcatgcaatccaaaataataaatataaaaaggtgaaatacgaaatactttcgacttgttttgttcacatttttaaattctta |
235 |
Q |
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| T |
13005226 |
ctaccttaacattttctatcatgcaatccaaaataataaatataaaaaggtgaaatacgaaatactttcgacttgttttgttcacatttttaaattctta |
13005127 |
T |
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| Q |
236 |
aaataagggaaataaaattaaaacagtttagtattttccataattataaacgtttaaactcaacaaga |
303 |
Q |
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| T |
13005126 |
aaataagggaaataaaatgaaaacagtttagtattttccataattataaacgtttaaactcaaaaaga |
13005059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 13006052 - 13005985
Alignment:
| Q |
77 |
aatattatccatacccaactaccagtcaatgcaactgcagtgcaaagtacttagtctaactaccttaa |
144 |
Q |
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| T |
13006052 |
aatattatccatagccaactaccagtcaatgcaaatgcattgcaaagaacttagtctaacaaccttaa |
13005985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 13121350 - 13121434
Alignment:
| Q |
81 |
ttatccatacccaactaccagtcaatgcaactgcagtgcaaagtacttagtctaactaccttaacattttctatcatgcaatcca |
165 |
Q |
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| T |
13121350 |
ttatccatagccaactaccagtcaatgcaattgcaatgccaagcatttagtctaacaaccttaacatttcctctcatgcagtcca |
13121434 |
T |
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