View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21035_low_1 (Length: 1047)

Name: NF21035_low_1
Description: NF21035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21035_low_1
NF21035_low_1
[»] chr7 (11 HSPs)
chr7 (190-389)||(32548522-32548721)
chr7 (269-385)||(32547707-32547823)
chr7 (1-74)||(32548285-32548358)
chr7 (650-731)||(28138759-28138840)
chr7 (340-389)||(29060738-29060787)
chr7 (340-389)||(40320409-40320458)
chr7 (340-389)||(42607081-42607130)
chr7 (713-771)||(149036-149094)
chr7 (320-362)||(30915761-30915803)
chr7 (133-163)||(32548417-32548447)
chr7 (662-711)||(38386186-38386235)
[»] chr6 (8 HSPs)
chr6 (399-570)||(31019628-31019799)
chr6 (340-389)||(25067849-25067898)
chr6 (328-389)||(29290123-29290184)
chr6 (429-491)||(31019612-31019674)
chr6 (647-711)||(32275788-32275852)
chr6 (343-389)||(25371169-25371215)
chr6 (311-389)||(34035014-34035092)
chr6 (340-389)||(16764925-16764974)
[»] chr4 (23 HSPs)
chr4 (190-389)||(33370726-33370923)
chr4 (269-389)||(33369909-33370029)
chr4 (1-76)||(33370489-33370564)
chr4 (650-756)||(54208180-54208286)
chr4 (320-389)||(23383310-23383379)
chr4 (323-391)||(17512188-17512256)
chr4 (341-389)||(34154794-34154842)
chr4 (323-390)||(232031-232098)
chr4 (340-390)||(25970105-25970155)
chr4 (339-389)||(38009284-38009334)
chr4 (340-389)||(39429936-39429985)
chr4 (311-362)||(6246811-6246862)
chr4 (347-389)||(32449317-32449359)
chr4 (133-163)||(33370621-33370651)
chr4 (340-390)||(38010847-38010897)
chr4 (659-697)||(38676948-38676986)
chr4 (323-389)||(41261122-41261188)
chr4 (340-389)||(3167477-3167525)
chr4 (662-711)||(24974163-24974212)
chr4 (650-711)||(27992321-27992382)
chr4 (340-389)||(39451306-39451354)
chr4 (340-389)||(47326788-47326837)
chr4 (340-389)||(47341584-47341633)
[»] chr5 (22 HSPs)
chr5 (190-390)||(32944335-32944533)
chr5 (269-389)||(32943517-32943637)
chr5 (1-76)||(32944098-32944173)
chr5 (661-771)||(40266545-40266655)
chr5 (648-729)||(25787840-25787921)
chr5 (717-779)||(17644530-17644592)
chr5 (311-388)||(4789521-4789598)
chr5 (311-388)||(26712358-26712435)
chr5 (311-388)||(26982096-26982173)
chr5 (318-389)||(35262452-35262523)
chr5 (311-389)||(4554657-4554735)
chr5 (323-389)||(4555442-4555508)
chr5 (662-711)||(6706052-6706101)
chr5 (650-711)||(11135741-11135802)
chr5 (311-389)||(26711568-26711647)
chr5 (311-389)||(26981305-26981384)
chr5 (717-771)||(1145814-1145868)
chr5 (661-711)||(7335544-7335594)
chr5 (133-163)||(32944230-32944260)
chr5 (340-389)||(9923388-9923437)
chr5 (668-733)||(17636362-17636427)
chr5 (340-389)||(36912246-36912294)
[»] chr1 (11 HSPs)
chr1 (925-1029)||(23944112-23944216)
chr1 (223-389)||(38931314-38931480)
chr1 (343-389)||(2687729-2687775)
chr1 (320-382)||(29334221-29334283)
chr1 (668-761)||(5603128-5603221)
chr1 (659-759)||(42883723-42883823)
chr1 (311-362)||(31788246-31788297)
chr1 (320-382)||(43316364-43316426)
chr1 (650-705)||(37259311-37259366)
chr1 (649-711)||(28446547-28446609)
chr1 (340-389)||(48835096-48835145)
[»] chr8 (12 HSPs)
chr8 (223-389)||(37562295-37562461)
chr8 (647-759)||(27235489-27235601)
chr8 (320-389)||(40450965-40451034)
chr8 (715-767)||(150940-150992)
chr8 (647-731)||(9448342-9448426)
chr8 (311-362)||(43972056-43972107)
chr8 (641-767)||(15908883-15909009)
chr8 (702-771)||(17875321-17875390)
chr8 (340-389)||(35840529-35840578)
chr8 (340-389)||(35943076-35943125)
chr8 (340-389)||(35943838-35943887)
chr8 (340-389)||(42346104-42346153)
[»] chr3 (14 HSPs)
chr3 (650-757)||(26998258-26998365)
chr3 (223-389)||(51421557-51421723)
chr3 (649-698)||(3539667-3539716)
chr3 (320-392)||(44406938-44407010)
chr3 (343-390)||(33968180-33968227)
chr3 (646-724)||(30533216-30533294)
chr3 (340-389)||(33454866-33454915)
chr3 (320-389)||(45297549-45297618)
chr3 (340-391)||(43768758-43768809)
chr3 (320-390)||(8653699-8653769)
chr3 (340-389)||(33455780-33455829)
chr3 (340-389)||(44021286-44021334)
chr3 (340-389)||(49161807-49161856)
chr3 (243-309)||(49287777-49287845)
[»] chr2 (11 HSPs)
chr2 (318-389)||(34617653-34617724)
chr2 (320-389)||(36390957-36391026)
chr2 (650-767)||(12965049-12965166)
chr2 (311-392)||(42369640-42369721)
chr2 (311-362)||(4976475-4976526)
chr2 (311-362)||(4994382-4994433)
chr2 (650-729)||(19984702-19984781)
chr2 (312-362)||(42370921-42370971)
chr2 (243-309)||(4386098-4386166)
chr2 (320-389)||(7868120-7868189)
chr2 (340-389)||(20992018-20992067)
[»] scaffold0189 (1 HSPs)
scaffold0189 (311-362)||(12829-12880)
[»] scaffold0085 (2 HSPs)
scaffold0085 (647-726)||(46580-46659)
scaffold0085 (659-712)||(47239-47292)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 4e-87; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 190 - 389
Target Start/End: Original strand, 32548522 - 32548721
Alignment:
Q  190 gtgaagggcaggagagttgggacaaccattttgatggtgttgctggtggtagtttggttggtatgaaggagagatgcttgtggaagatagtgacaaaata 289  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||||    
T  32548522 gtgaagggaaggagagttgggacaaccattttgatggtgttgctggtggtgggttggttggtatgaaggagagatggtagtggaagatagtgacaaaata 32548621  T
Q  290 atatagtgttgagggtgtatagttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||    
T  32548622 atataatgttgagggtgtatagttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagtatcatttcccatactaaaccccacc 32548721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 269 - 385
Target Start/End: Complemental strand, 32547823 - 32547707
Alignment:
Q  269 gtggaagatagtgacaaaataatatagtgttgagggtgtatagttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcc 368  Q
    |||||||||  |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  32547823 gtggaagatgatgacaaaataatctagtgttgagggtctatagttctctatttgatctaatggctaacattaactttcctatggtggaaaacaagaatcc 32547724  T
Q  369 tttcccatgctaaaccc 385  Q
    |||||||||||||||||    
T  32547723 tttcccatgctaaaccc 32547707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 32548285 - 32548358
Alignment:
Q  1 aattaaagataaaataataagaagattagattattaaaaacaaaagtggtaaaatatagaatggggttttgtta 74  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32548285 aattaaggataaaataataagaagattagattattagaaacaaaagtggtaaaatatagaatggggttttgtta 32548358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 650 - 731
Target Start/End: Original strand, 28138759 - 28138840
Alignment:
Q  650 gaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgcta 731  Q
    ||||| || |||||| ||||||| ||||||||||| ||||| ||||||||  |||||||||||| ||| |||||| ||||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctgcgtgacttaactcacgcta 28138840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 29060738 - 29060787
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  29060738 aactttcccatggtgggaaacaattcccctttcccatgctaaaccccacc 29060787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 40320409 - 40320458
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||| ||||||||||||||||   ||||||||||||||||||||||||    
T  40320409 aacttttccatggtgggaaacaactctcctttcccatgctaaaccccacc 40320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 42607130 - 42607081
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  42607130 aactttcccatggtgggaaacaattcccctttcccatgctaaaccccacc 42607081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 713 - 771
Target Start/End: Original strand, 149036 - 149094
Alignment:
Q  713 catgagttaacttacgctaatattaaatttacatgagttaactcacgttgcgtgactta 771  Q
    |||||||||||| |||||| | |||||||| | |||||||| ||||||||| |||||||    
T  149036 catgagttaactcacgctagtgttaaatttgcgtgagttaagtcacgttgcatgactta 149094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 30915803 - 30915761
Alignment:
Q  320 ttgatctaatggctaacattaactttcccatggtgggaaacaa 362  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||    
T  30915803 ttgatctaatgggtaaaatttactttcccatggtgggaaacaa 30915761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 163
Target Start/End: Original strand, 32548417 - 32548447
Alignment:
Q  133 gtttggtatttttcatctgtcaattagggtg 163  Q
    |||||||||||||||||||||||||||||||    
T  32548417 gtttggtatttttcatctgtcaattagggtg 32548447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 662 - 711
Target Start/End: Original strand, 38386186 - 38386235
Alignment:
Q  662 ttatccaaatggttttgctcatttccaaaataaatgactgaaatacccct 711  Q
    |||||||||||| || ||||||||||||| ||||||| |||||| |||||    
T  38386186 ttatccaaatggattcgctcatttccaaagtaaatgattgaaatgcccct 38386235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 2e-82; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 399 - 570
Target Start/End: Complemental strand, 31019799 - 31019628
Alignment:
Q  399 aggatccaaatgtctaaaaaatattaaattttttgaagtaaacatttttacatttggattgtagaatccgaatgtgtaaaaatcctgagaattttgaagc 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  31019799 aggatccaaatgtctaaaaaatattaaattttttgaagtaaacatttttacatttggattgtagaatccgaatgtgtaaaaatcctggaaattttgaagc 31019700  T
Q  499 acacattttacatccacattgaaaattttaaagtgaacattttcgcatgtggattgtagaatccaaatgtat 570  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31019699 acacattttacatccactttgaaaattttaaagtgaacattttcgcatgtggattgtagaatccgaatgtat 31019628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 25067849 - 25067898
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||| ||||||||||||||  |||||||||||||||||||||||||    
T  25067849 aactttcctatggtgggaaacaaatatcctttcccatgctaaaccccacc 25067898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 29290184 - 29290123
Alignment:
Q  328 atggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||| ||||||||||||||||||||||||||||||   ||| || |||||||||||||||||    
T  29290184 atggttaacattaactttcccatggtgggaaacaactctccatttccatgctaaaccccacc 29290123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 429 - 491
Target Start/End: Complemental strand, 31019674 - 31019612
Alignment:
Q  429 ttttgaagtaaacatttttacatttggattgtagaatccgaatgtgtaaaaatcctgagaatt 491  Q
    |||| |||| ||||||||  ||| ||||||||||||||||||||| |||||||||||| ||||    
T  31019674 ttttaaagtgaacattttcgcatgtggattgtagaatccgaatgtataaaaatcctgaaaatt 31019612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 647 - 711
Target Start/End: Complemental strand, 32275852 - 32275788
Alignment:
Q  647 tttgaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccct 711  Q
    |||||||| || || ||||||||||||||  ||||||| ||||| |||||||||||||| |||||    
T  32275852 tttgaattatgctcattatccaaatggttccgctcattcccaaagtaaatgactgaaatgcccct 32275788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 25371215 - 25371169
Alignment:
Q  343 tttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||||    ||||||||||||||||||||||    
T  25371215 tttcccatggtgggaaacaagttcactttcccatgctaaaccccacc 25371169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 34035014 - 34035092
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||| |||||| ||||| | | | ||||||||||||| ||||||||||   |||||||||||| ||||| |||||    
T  34035014 gttctctatttgatccaatggtttaaaataactttcccatgatgggaaacaattctcctttcccatgttaaactccacc 34035092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 16764974 - 16764925
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    ||||| |||||||||||||||||   |||||||||||||||||| |||||    
T  16764974 aacttccccatggtgggaaacaactttcctttcccatgctaaactccacc 16764925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 1e-80; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 190 - 389
Target Start/End: Original strand, 33370726 - 33370923
Alignment:
Q  190 gtgaagggcaggagagttgggacaaccattttgatggtgttgctggtggtagtttggttggtatgaaggagagatgcttgtggaagatagtgacaaaata 289  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| | |||||||||||||||||  ||    
T  33370726 gtgaagggaaggagagttgggacaaccattttgatggtgttgctggtggtgggttggttggtatggaggagagatggtagtggaagatagtgacaa--ta 33370823  T
Q  290 atatagtgttgagggtgtatagttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33370824 atctagtgttgagggtgtataattctctacttgatctaatggctaacattaactttcccatggtgggaaacaagtatcctttcccatgctaaaccccacc 33370923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 269 - 389
Target Start/End: Complemental strand, 33370029 - 33369909
Alignment:
Q  269 gtggaagatagtgacaaaataatatagtgttgagggtgtatagttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcc 368  Q
    ||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||     
T  33370029 gtggaagatggttacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaacattaactttcccatggtgggaaacaaatatca 33369930  T
Q  369 tttcccatgctaaaccccacc 389  Q
    |||||||||||||| ||||||    
T  33369929 tttcccatgctaaatcccacc 33369909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33370489 - 33370564
Alignment:
Q  1 aattaaagataaaataataagaagattagattattaaaaacaaaagtggtaaaatatagaatggggttttgttaca 76  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33370489 aattaaagataaaataataagaagattagattattagaaacaaaagtggtaaaatatagaatggggttttgttaca 33370564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 650 - 756
Target Start/End: Original strand, 54208180 - 54208286
Alignment:
Q  650 gaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgctaatattaaatttacatgag 749  Q
    ||||| || |||||||||||||||||||||||||| ||||| |||||||   |||||||||| |   |||||||||||| || | || ||||||| |||     
T  54208180 gaattatgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaacttacgttagtgttgaatttacgtgac 54208279  T
Q  750 ttaactc 756  Q
    |||||||    
T  54208280 ttaactc 54208286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 23383379 - 23383310
Alignment:
Q  320 ttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||   ||||||| ||| ||||||||||||    
T  23383379 ttgatcgaatggataaaattaactttcccatggtgggaaacaactctcctttctcattctaaaccccacc 23383310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 17512188 - 17512256
Alignment:
Q  323 atctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccaccat 391  Q
    |||||||| |||| ||| ||||||||||| ||||||||||  |||| ||| ||||||||||||||||||    
T  17512188 atctaatgactaaaatttactttcccatgatgggaaacaactatccattctcatgctaaaccccaccat 17512256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 34154842 - 34154794
Alignment:
Q  341 actttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||||||  || |||||||||||||||||||||    
T  34154842 actttcccatggtgggaaacaagtttcttttcccatgctaaaccccacc 34154794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 232031 - 232098
Alignment:
Q  323 atctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacca 390  Q
    ||||||||| ||| ||| ||||||||||||||||||||||    |||||||||| |||||||||||||    
T  232031 atctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatactaaaccccacca 232098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 25970155 - 25970105
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacca 390  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||    
T  25970155 aactttcccatggtgggaaacaactcccctttcccatgctaaaccccacca 25970105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 38009334 - 38009284
Alignment:
Q  339 taactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    ||||||| ||||||||||||||||  |||||||||||||||||| ||||||    
T  38009334 taacttttccatggtgggaaacaattatcctttcccatgctaaatcccacc 38009284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 39429936 - 39429985
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||||||   ||| ||||||||||||||||||||    
T  39429936 aactttcccatggtgggaaacaactctccattcccatgctaaaccccacc 39429985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 6246862 - 6246811
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaa 362  Q
    ||||||||| | |||||||||  || ||||||||||||||||||||||||||    
T  6246862 gttctctaccttatctaatggtcaaaattaactttcccatggtgggaaacaa 6246811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 32449359 - 32449317
Alignment:
Q  347 ccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||    
T  32449359 ccatggtgggaaacaagtatcctttcccatactaaatcccacc 32449317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 163
Target Start/End: Original strand, 33370621 - 33370651
Alignment:
Q  133 gtttggtatttttcatctgtcaattagggtg 163  Q
    |||||||||||||||||||||||||||||||    
T  33370621 gtttggtatttttcatctgtcaattagggtg 33370651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 38010847 - 38010897
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacca 390  Q
    |||||||||||| ||| ||||||  |||||||||||||||||||| |||||    
T  38010847 aactttcccatgatggaaaacaaatatcctttcccatgctaaacctcacca 38010897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 659 - 697
Target Start/End: Original strand, 38676948 - 38676986
Alignment:
Q  659 tctttatccaaatggttttgctcatttccaaaataaatg 697  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  38676948 tctttatccaaacggttttgctcattcccaaaataaatg 38676986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 41261188 - 41261122
Alignment:
Q  323 atctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    ||||||||| ||| |  |||||||||||||||| ||||||   ||||||||||||||||||| ||||    
T  41261188 atctaatggttaagaaaaactttcccatggtggaaaacaactttcctttcccatgctaaacctcacc 41261122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 3167477 - 3167525
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||| |  |||| |||||||||||||||||||||    
T  3167477 aactttcccatggtgggaaaaagtaatc-tttcccatgctaaaccccacc 3167525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 662 - 711
Target Start/End: Complemental strand, 24974212 - 24974163
Alignment:
Q  662 ttatccaaatggttttgctcatttccaaaataaatgactgaaatacccct 711  Q
    |||||||||||| |||||||||| ||||| |||||||| ||||| |||||    
T  24974212 ttatccaaatggatttgctcattcccaaagtaaatgaccgaaatgcccct 24974163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 650 - 711
Target Start/End: Complemental strand, 27992382 - 27992321
Alignment:
Q  650 gaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccct 711  Q
    ||||| ||||| ||| |||||||| |||||||||||| |||||||||| |  ||||||||||    
T  27992382 gaattatgttcattacccaaatggatttgctcatttctaaaataaatgtccaaaatacccct 27992321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 39451306 - 39451354
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||| |||| ||| |||||||||||||| |||||    
T  39451306 aactttcccatggtgggaaa-aagagtccgttcccatgctaaacgccacc 39451354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 47326788 - 47326837
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||||||   ||||||||||||||| || |||||    
T  47326788 aactttcccatggtgggaaacaactttcctttcccatgctatactccacc 47326837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 47341584 - 47341633
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||||||   ||||||||||||||| || |||||    
T  47341584 aactttcccatggtgggaaacaactttcctttcccatgctatactccacc 47341633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 2e-76; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 190 - 390
Target Start/End: Original strand, 32944335 - 32944533
Alignment:
Q  190 gtgaagggcaggagagttgggacaaccattttgatggtgttgctggtggtagtttggttggtatgaaggagagatgcttgtggaagatagtgacaaaata 289  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| | |||||||||||||||||  ||    
T  32944335 gtgaagggaaggagagttgggacaaccattttgatggtgttgctggtggtgggttggttggtatggaggagagatggtagtggaagatagtgacaa--ta 32944432  T
Q  290 atatagtgttgagggtgtatagttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||    
T  32944433 atctagtgttgagggtgtatagttctctacttaatctaatggctaacattaacttttccatggtgggaaacaagtatcatttcccatgctaaaccccacc 32944532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 269 - 389
Target Start/End: Complemental strand, 32943637 - 32943517
Alignment:
Q  269 gtggaagatagtgacaaaataatatagtgttgagggtgtatagttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcc 368  Q
    ||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||    
T  32943637 gtggaagatggttacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaacattaactttcccatggtgggaaacaaatatcc 32943538  T
Q  369 tttcccatgctaaaccccacc 389  Q
    |||||||||||||| ||||||    
T  32943537 tttcccatgctaaatcccacc 32943517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32944098 - 32944173
Alignment:
Q  1 aattaaagataaaataataagaagattagattattaaaaacaaaagtggtaaaatatagaatggggttttgttaca 76  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32944098 aattaaagataaaataataagaagattagattattagaaacaaaagtggtaaaatatagaatggggttttgttaca 32944173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 661 - 771
Target Start/End: Complemental strand, 40266655 - 40266545
Alignment:
Q  661 tttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgctaatattaaatttacatgagttaactcacgt 760  Q
    |||| |||||||| |||||||||| ||||| ||||||||  |||| ||| ||| |||||||||| |||||||| |||||||| | ||||||||||||||     
T  40266655 tttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgc 40266556  T
Q  761 tgcgtgactta 771  Q
    | |||||||||    
T  40266555 tacgtgactta 40266545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 648 - 729
Target Start/End: Complemental strand, 25787921 - 25787840
Alignment:
Q  648 ttgaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgc 729  Q
    ||||||| || |||||||||||| |||| |||||||||||||||||||||||  |||| |||||||||||||||||| ||||    
T  25787921 ttgaattctgctctttatccaaacggttatgctcatttccaaaataaatgaccaaaatgcccctgcatgagttaactcacgc 25787840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 717 - 779
Target Start/End: Complemental strand, 17644592 - 17644530
Alignment:
Q  717 agttaacttacgctaatattaaatttacatgagttaactcacgttgcgtgacttagatcacgc 779  Q
    |||||||| |||||| | ||||||||||||||||||||||||| ||||||||||| |||||||    
T  17644592 agttaactcacgctagtgttaaatttacatgagttaactcacgctgcgtgacttaaatcacgc 17644530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 311 - 388
Target Start/End: Complemental strand, 4789598 - 4789521
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccac 388  Q
    |||||| | ||||||||||||  || | ||||||||||||||||||||||||    ||||||||||||||||||||||    
T  4789598 gttctccatttgatctaatggtcaagaataactttcccatggtgggaaacaactcccctttcccatgctaaaccccac 4789521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 26712358 - 26712435
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccac 388  Q
    ||||| |||||||||| |||| ||| |||| |||||||||||||||||||||    ||||||||||||||||| ||||    
T  26712358 gttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttcccatgctaaactccac 26712435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 26982096 - 26982173
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccac 388  Q
    ||||| |||||||||| |||| ||| |||| |||||||||||||||||||||    ||||||||||||||||| ||||    
T  26982096 gttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttcccatgctaaactccac 26982173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 35262523 - 35262452
Alignment:
Q  318 acttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||| |||||||||  || | ||||||||||||||| ||||||||  ||||||||||||||||||| |||||    
T  35262523 acttaatctaatggtcaaaaataactttcccatggtaggaaacaattatcctttcccatgctaaactccacc 35262452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 4554735 - 4554657
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    ||||||||||| |||||||||  || |||| ||||| |||||||| ||||||   ||||||||||| ||||||||||||    
T  4554735 gttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaattttcctttcccatactaaaccccacc 4554657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 4555442 - 4555508
Alignment:
Q  323 atctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||||||| |||| ||||||| ||    | |||||||||||||||||||||    
T  4555442 atctaatggctaacattaactttcacatgatgggaaagaacttccatttcccatgctaaaccccacc 4555508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 662 - 711
Target Start/End: Complemental strand, 6706101 - 6706052
Alignment:
Q  662 ttatccaaatggttttgctcatttccaaaataaatgactgaaatacccct 711  Q
    |||||||||||| || ||||||||||||| |||||||||||||| |||||    
T  6706101 ttatccaaatggattcgctcatttccaaagtaaatgactgaaatgcccct 6706052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 650 - 711
Target Start/End: Original strand, 11135741 - 11135802
Alignment:
Q  650 gaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccct 711  Q
    ||||| || |||||| ||||||| ||| ||||||||||||||||||||||  ||||||||||    
T  11135741 gaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccct 11135802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 26711647 - 26711568
Alignment:
Q  311 gttctctacttgatctaatgg-ctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||| |||||||| ||| |||| ||| ||||||| ||| ||||||||||   ||||||||||| ||||||||||||    
T  26711647 gttctctaattgatctagtggtctaaaatttactttcctatgttgggaaacaactttcctttcccatactaaaccccacc 26711568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 26981384 - 26981305
Alignment:
Q  311 gttctctacttgatctaatgg-ctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||| |||||||| ||| |||| ||| ||||||| ||| ||||||||||   ||||||||||| ||||||||||||    
T  26981384 gttctctaattgatctagtggtctaaaatttactttcctatgttgggaaacaactttcctttcccatactaaaccccacc 26981305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 717 - 771
Target Start/End: Complemental strand, 1145868 - 1145814
Alignment:
Q  717 agttaacttacgctaatattaaatttacatgagttaactcacgttgcgtgactta 771  Q
    |||||||| |||||||| | |||||| |||||||||||||||| |||||| ||||    
T  1145868 agttaactcacgctaatgtaaaatttgcatgagttaactcacgctgcgtgtctta 1145814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 661 - 711
Target Start/End: Original strand, 7335544 - 7335594
Alignment:
Q  661 tttatccaaatggttttgctcatttccaaaataaatgactgaaatacccct 711  Q
    |||||||||| ||||||||||||| | ||||||||||||  ||||||||||    
T  7335544 tttatccaaacggttttgctcattcctaaaataaatgaccaaaatacccct 7335594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 163
Target Start/End: Original strand, 32944230 - 32944260
Alignment:
Q  133 gtttggtatttttcatctgtcaattagggtg 163  Q
    |||||||||||||||||||||||||||||||    
T  32944230 gtttggtatttttcatctgtcaattagggtg 32944260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 9923437 - 9923388
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||| ||||||||||||||||   ||| ||||||||||||||||||||    
T  9923437 aacttttccatggtgggaaacaactctccattcccatgctaaaccccacc 9923388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 733
Target Start/End: Original strand, 17636362 - 17636427
Alignment:
Q  668 aaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgctaat 733  Q
    |||||| || ||||||| ||||||||||||| |||||||||||| ||   ||||||| ||||||||    
T  17636362 aaatggattcgctcattcccaaaataaatgattgaaatacccctacacatgttaactcacgctaat 17636427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 36912294 - 36912246
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||| || |  |||||||||||||||||||||||    
T  36912294 aactttcccatggtgggaaaaaatag-cctttcccatgctaaaccccacc 36912246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 6e-40; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 925 - 1029
Target Start/End: Original strand, 23944112 - 23944216
Alignment:
Q  925 agagctccgctaggttttcttcttgttcatggatttcaccttcacatctccacggccagcggcaatgtcttcgaaaccgcctgaccctcccgacaagagt 1024  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23944112 agagctccggtagggtttcttcttgttcatggatttcactttcacgtctccacggccagcggccatgtcttcgaaaccgcctgaccctcccgacaagagt 23944211  T
Q  1025 ggtga 1029  Q
    |||||    
T  23944212 ggtga 23944216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 223 - 389
Target Start/End: Complemental strand, 38931480 - 38931314
Alignment:
Q  223 atggtgttgctggtggtagtttggttggtatgaagga--gagatgcttgtggaagatagtgacaaaataatatagtgttgagggtgtatagttctctact 320  Q
    ||||||||||||||||| | ||||| || ||||||||  |||||| | ||||||||||||||||||  |||||||||||||| ||||||  |    |  |    
T  38931480 atggtgttgctggtggtgggttggtggggatgaaggagagagatggtagtggaagatagtgacaaa--aatatagtgttgagagtgtatgataagattgt 38931383  T
Q  321 tgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
     |||||||||| | | ||| ||||||||||||||||||||||    |||||| ||||||||||||||||    
T  38931382 agatctaatggttcaaattgactttcccatggtgggaaacaattcccctttctcatgctaaaccccacc 38931314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 2687729 - 2687775
Alignment:
Q  343 tttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||    
T  2687729 tttcccatggtgggaaacaattatcctttcccatgctaaaccccacc 2687775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 29334283 - 29334221
Alignment:
Q  320 ttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaa 382  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||  |||| |||||||||||||    
T  29334283 ttgatctaatgggtaaaatttactttcccatggtgggaaacaactatccattcccatgctaaa 29334221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 668 - 761
Target Start/End: Complemental strand, 5603221 - 5603128
Alignment:
Q  668 aaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgctaatattaaatttacatgagttaactcacgtt 761  Q
    |||||| ||||||||||| |||| |||||||   || |  ||||||||||||||||| |||||| | |||||||| | ||||||||||||||||    
T  5603221 aaatggatttgctcattttcaaagtaaatgatcaaagtgtccctgcatgagttaactcacgctagtgttaaatttgcgtgagttaactcacgtt 5603128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 659 - 759
Target Start/End: Complemental strand, 42883823 - 42883723
Alignment:
Q  659 tctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgctaatattaaatttacatgagttaactcac 758  Q
    |||||| | ||||||||||||||||||| |||||||||| |  ||||| |||| ||   ||||||| |||| | | |||||||| |||||||||||||||    
T  42883823 tctttagctaaatggttttgctcatttctaaaataaatgtccaaaatatccctacacatgttaactcacgcaagtgttaaatttgcatgagttaactcac 42883724  T
Q  759 g 759  Q
    |    
T  42883723 g 42883723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 31788246 - 31788297
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaa 362  Q
    |||||||| || ||||||||| ||| ||||||||||||||||||||||||||    
T  31788246 gttctctattttatctaatggttaaaattaactttcccatggtgggaaacaa 31788297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 43316426 - 43316364
Alignment:
Q  320 ttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaa 382  Q
    |||||| ||||| ||| ||| ||||||||||||||||||||||  |||| |||||||||||||    
T  43316426 ttgatcaaatggataaaatttactttcccatggtgggaaacaactatccattcccatgctaaa 43316364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 705
Target Start/End: Original strand, 37259311 - 37259366
Alignment:
Q  650 gaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaat 705  Q
    ||||| || |||||||| ||| ||||||||||||||||||| |||||| |||||||    
T  37259311 gaattatgctctttatctaaacggttttgctcatttccaaagtaaatgtctgaaat 37259366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 649 - 711
Target Start/End: Complemental strand, 28446609 - 28446547
Alignment:
Q  649 tgaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccct 711  Q
    ||||||||| || ||| |||||||| || ||||||| ||||| |||||||||||||| |||||    
T  28446609 tgaattttgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccct 28446547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 48835096 - 48835145
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||| ||||||    |||||||||||||||||||||||    
T  48835096 aactttcccatggtggaaaacaattcccctttcccatgctaaaccccacc 48835145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 5e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 223 - 389
Target Start/End: Complemental strand, 37562461 - 37562295
Alignment:
Q  223 atggtgttgctggtggtagtttggttggtatgaaggagaga--tgcttgtggaagatagtgacaaaataatatagtgttgagggtgtatagttctctact 320  Q
    ||||||||||||||||| | ||||| || ||||||||||||  || | |||||||||||||||||||  ||||||||||||| ||||||  |    |  |    
T  37562461 atggtgttgctggtggtgggttggtggggatgaaggagagagatggtagtggaagatagtgacaaaa--atatagtgttgagagtgtatgataagattgt 37562364  T
Q  321 tgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
     |||||||||| ||| ||| ||||||| ||||||||||||||   ||||||||||||||||||||||||    
T  37562363 agatctaatggttaaaattgactttcctatggtgggaaacaattctcctttcccatgctaaaccccacc 37562295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 647 - 759
Target Start/End: Complemental strand, 27235601 - 27235489
Alignment:
Q  647 tttgaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgctaatattaaatttacat 746  Q
    |||||||| || |||||||| ||||| |||||||||||  ||||  || ||||| ||||| |||| ||   |||||||||||||||| |||||||| | |    
T  27235601 tttgaattatgctctttatctaaatgtttttgctcattctcaaagaaattgactaaaatatccctacacatgttaacttacgctaatgttaaatttgcgt 27235502  T
Q  747 gagttaactcacg 759  Q
    ||||||| |||||    
T  27235501 gagttaaatcacg 27235489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 40450965 - 40451034
Alignment:
Q  320 ttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||    | |||||||| ||||||||||||    
T  40450965 ttgatctaatggttaaaatttactttcccatggtgggaaacaacttacatttcccatactaaaccccacc 40451034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 715 - 767
Target Start/End: Complemental strand, 150992 - 150940
Alignment:
Q  715 tgagttaacttacgctaatattaaatttacatgagttaactcacgttgcgtga 767  Q
    |||||||||||||||||||||||| | | | ||| ||||||||||||||||||    
T  150992 tgagttaacttacgctaatattaattctgcgtgacttaactcacgttgcgtga 150940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 647 - 731
Target Start/End: Original strand, 9448342 - 9448426
Alignment:
Q  647 tttgaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgcta 731  Q
    ||||||||||| |||||| ||||| ||||||| ||||| |||| |||||||||  ||||||| || | |||||||| | ||||||    
T  9448342 tttgaattttgctctttacccaaaaggttttgatcattcccaagataaatgaccaaaataccgctacgtgagttaagtcacgcta 9448426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 43972056 - 43972107
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaa 362  Q
    |||||||| || ||||||||| ||| |||||||||||||| |||||||||||    
T  43972056 gttctctattttatctaatggttaaaattaactttcccatagtgggaaacaa 43972107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 641 - 767
Target Start/End: Original strand, 15908883 - 15909009
Alignment:
Q  641 tcaatatttgaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgctaatattaaat 740  Q
    ||||| || |||||||| |||||||| || || |||||||| || ||||   ||| |||  || ||||| |||||||||||||| | |||| |||||| |    
T  15908883 tcaattttagaattttgctctttatctaactgtttttgctcgttcccaactgaaaagacaaaattacccatgcatgagttaactcatgctagtattaatt 15908982  T
Q  741 ttacatgagttaactcacgttgcgtga 767  Q
    |||  ||||||||| ||||||| ||||    
T  15908983 ttaagtgagttaacacacgttgtgtga 15909009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 702 - 771
Target Start/End: Complemental strand, 17875390 - 17875321
Alignment:
Q  702 aaatacccctgcatgagttaacttacgctaatattaaatttacatgagttaactcacgttgcgtgactta 771  Q
    ||||| |||||| |||||||||| || ||| | || ||||| | ||| ||||||||||||||||||||||    
T  17875390 aaataaccctgcgtgagttaactcacactagtgtttaatttgcgtgacttaactcacgttgcgtgactta 17875321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 35840529 - 35840578
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    ||||||||||| |||||||||||    |||||||||||||||||||||||    
T  35840529 aactttcccatcgtgggaaacaacttccctttcccatgctaaaccccacc 35840578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 35943125 - 35943076
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    ||||| |||||||||||||||||    |||||||||||||||||||||||    
T  35943125 aacttccccatggtgggaaacaacttccctttcccatgctaaaccccacc 35943076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 35943838 - 35943887
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||| |||| |||||||||||   ||||||||||||||||||||||||    
T  35943838 aacttttccatagtgggaaacaattctcctttcccatgctaaaccccacc 35943887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 42346104 - 42346153
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||| ||||||||||   ||| ||||||||||||||||||||    
T  42346104 aactttcccatgatgggaaacaactctccattcccatgctaaaccccacc 42346153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 650 - 757
Target Start/End: Complemental strand, 26998365 - 26998258
Alignment:
Q  650 gaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgctaatattaaatttacatgag 749  Q
    ||||| || |||| ||||||||||||| ||||||||| |||||||||||   ||||| |||| ||   ||||||| |||||| | |||||||||||||||    
T  26998365 gaattctgctcttcatccaaatggtttcgctcatttctaaaataaatgatcaaaatatccctacacatgttaactcacgctagtgttaaatttacatgag 26998266  T
Q  750 ttaactca 757  Q
    ||||||||    
T  26998265 ttaactca 26998258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 389
Target Start/End: Original strand, 51421557 - 51421723
Alignment:
Q  223 atggtgttgctggtggtagtttggttggtatgaag--gagagatgcttgtggaagatagtgacaaaataatatagtgttgagggtgtatagttctctact 320  Q
    ||||||||||||||||| | ||||| || ||||||  |||||||| | ||||||||||||||||||  |||||||||||||| ||||||  |    |  |    
T  51421557 atggtgttgctggtggtgggttggtggggatgaaggagagagatggtagtggaagatagtgacaaa--aatatagtgttgagagtgtatgataagattgt 51421654  T
Q  321 tgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
     ||| |||||| | | ||| ||||||||||||||||||||||    |||||| ||||||||||||||||    
T  51421655 agatttaatggttcaaattgactttcccatggtgggaaacaattcccctttctcatgctaaaccccacc 51421723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 649 - 698
Target Start/End: Original strand, 3539667 - 3539716
Alignment:
Q  649 tgaattttgttctttatccaaatggttttgctcatttccaaaataaatga 698  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||    
T  3539667 tgaattatgctctttatccaaatggttttgctcatttccaaaataaatga 3539716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 320 - 392
Target Start/End: Original strand, 44406938 - 44407010
Alignment:
Q  320 ttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccaccatc 392  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||  |||  |||||||||||||  ||||||||    
T  44406938 ttgatctaatgggtaaaatttactttcccatggtgggaaacaactatctattcccatgctaaatgccaccatc 44407010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 33968227 - 33968180
Alignment:
Q  343 tttcccatggtgggaaacaagaatcctttcccatgctaaaccccacca 390  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||    
T  33968227 tttcccatggtgggaaacaagttccctttcccatgctaaaccccacca 33968180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 646 - 724
Target Start/End: Original strand, 30533216 - 30533294
Alignment:
Q  646 atttgaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaact 724  Q
    |||||||||||  |||| | ||||||||||| ||||||| ||||| |||||| |  |||||||||||| ||||||||||    
T  30533216 atttgaattttactcttcacccaaatggtttcgctcattcccaaagtaaatgtcacaaatacccctgcgtgagttaact 30533294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 33454915 - 33454866
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    ||||||| |||||||||||||||   ||||||||||||||||||||||||    
T  33454915 aactttctcatggtgggaaacaattttcctttcccatgctaaaccccacc 33454866  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 45297618 - 45297549
Alignment:
Q  320 ttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||| ||| |  |||||||||||| ||||||||||   ||||||||||| ||||||||||||    
T  45297618 ttgatctaatggttaaaaaaaactttcccatgatgggaaacaactctcctttcccatactaaaccccacc 45297549  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 43768758 - 43768809
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccaccat 391  Q
    |||||||||||||||| ||||||   ||| ||||||||||||||||||||||    
T  43768758 aactttcccatggtggaaaacaactctccattcccatgctaaaccccaccat 43768809  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 8653699 - 8653769
Alignment:
Q  320 ttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacca 390  Q
    |||||| ||||| ||| ||| |||||| |||||||||||||||    ||||| ||||||||||||||||||    
T  8653699 ttgatcaaatggttaaaatttactttctcatggtgggaaacaatcccccttttccatgctaaaccccacca 8653769  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 33455780 - 33455829
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||| ||||||||||||||    |||||||||||||||||||||||    
T  33455780 aactttcctatggtgggaaacaattcccctttcccatgctaaaccccacc 33455829  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 44021334 - 44021286
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||||||   | ||||||||||||||||||||||    
T  44021334 aactttcccatggtgggaaacaa-ctttctttcccatgctaaaccccacc 44021286  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 49161807 - 49161856
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||||||||||    |||||||||||||||||| ||||    
T  49161807 aactttcccatggtgggaaacaattcccctttcccatgctaaacctcacc 49161856  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 49287845 - 49287777
Alignment:
Q  243 ttggttggtatgaaggagag--atgcttgtggaagatagtgacaaaataatatagtgttgagggtgtat 309  Q
    ||||| || |||||||||||  ||| ||||||||||||||||||||| ||| | |||||||| ||||||    
T  49287845 ttggtagggatgaaggagagtgatggttgtggaagatagtgacaaaaaaatttggtgttgagagtgtat 49287777  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 34617724 - 34617653
Alignment:
Q  318 acttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||| |||||||||  || | ||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  34617724 acttaatctaatggtcaaaaataactttcccatggtgggaaacaattatcctttcccatgctaaaccccacc 34617653  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 36391026 - 36390957
Alignment:
Q  320 ttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||    |||||||||||||||||||||||    
T  36391026 ttgatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatgctaaaccccacc 36390957  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 650 - 767
Target Start/End: Original strand, 12965049 - 12965166
Alignment:
Q  650 gaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgctaatattaaatttacatgag 749  Q
    ||||| || |||||| ||||| | || ||||||||| |||| |||||||   |||| | ||| | |||||||||| |||||||| ||||||||||  |||    
T  12965049 gaattctgctctttacccaaacgtttctgctcattttcaaagtaaatgatcaaaatgctcctacgtgagttaactcacgctaatgttaaatttacgagag 12965148  T
Q  750 ttaactcacgttgcgtga 767  Q
    |||||||||| |||||||    
T  12965149 ttaactcacgctgcgtga 12965166  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 311 - 392
Target Start/End: Complemental strand, 42369721 - 42369640
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccaccatc 392  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||   |||||||   |||||| |||| |||||||||||||||    
T  42369721 gttctctactttatctaatggctaatatttactttcccatggattgaaacaactttccttttccatactaaaccccaccatc 42369640  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 4976475 - 4976526
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaa 362  Q
    |||||||| || ||||||||| ||| |||||||||||||| |||||||||||    
T  4976475 gttctctattttatctaatggttaaaattaactttcccatagtgggaaacaa 4976526  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 4994382 - 4994433
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaa 362  Q
    |||||||| || ||||||||| ||| |||||||||||||| |||||||||||    
T  4994382 gttctctattttatctaatggttaaaattaactttcccatagtgggaaacaa 4994433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 729
Target Start/End: Complemental strand, 19984781 - 19984702
Alignment:
Q  650 gaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaacttacgc 729  Q
    ||||| || |||||| ||||| |||| ||||| |||| ||| ||||||||  |||||||||||| |||||||||| ||||    
T  19984781 gaattctgctctttacccaaacggttatgctcgtttctaaagtaaatgaccaaaatacccctgcgtgagttaactcacgc 19984702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 42370921 - 42370971
Alignment:
Q  312 ttctctacttgatctaatggctaacattaactttcccatggtgggaaacaa 362  Q
    ||||| |||| |||||||||| || ||| ||||||||||||||||||||||    
T  42370921 ttctccactttatctaatggccaatatttactttcccatggtgggaaacaa 42370971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 4386098 - 4386166
Alignment:
Q  243 ttggttggtatgaaggagag--atgcttgtggaagatagtgacaaaataatatagtgttgagggtgtat 309  Q
    ||||| || |||||||||||  ||| ||||||||||||||||||||| | | |||||||||| ||||||    
T  4386098 ttggtggggatgaaggagagtgatggttgtggaagatagtgacaaaaaattctagtgttgagagtgtat 4386166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 7868120 - 7868189
Alignment:
Q  320 ttgatctaatggctaacattaactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||| ||| ||| ||| ||||||||||||||||||||||    |||||| ||||||||| ||||||    
T  7868120 ttgatctagtggttaaaatttactttcccatggtgggaaacaactcccctttctcatgctaaatcccacc 7868189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 20992018 - 20992067
Alignment:
Q  340 aactttcccatggtgggaaacaagaatcctttcccatgctaaaccccacc 389  Q
    |||||||||||||||| ||||||   ||| ||||||||||||||||||||    
T  20992018 aactttcccatggtggaaaacaactctccattcccatgctaaaccccacc 20992067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 12829 - 12880
Alignment:
Q  311 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaa 362  Q
    |||||||| || |||||||||  || ||||||||||||||||||||||||||    
T  12829 gttctctagtttatctaatggtcaaaattaactttcccatggtgggaaacaa 12880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 726
Target Start/End: Original strand, 46580 - 46659
Alignment:
Q  647 tttgaattttgttctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctgcatgagttaactta 726  Q
    |||||||| |||| || ||||||| |||||||||||||   ||| ||||| ||  |||||||||||| ||||||||||||    
T  46580 tttgaattatgtttttcatccaaacggttttgctcattattaaagtaaataaccaaaatacccctgcgtgagttaactta 46659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 659 - 712
Target Start/End: Complemental strand, 47292 - 47239
Alignment:
Q  659 tctttatccaaatggttttgctcatttccaaaataaatgactgaaatacccctg 712  Q
    |||||||||||| |||| |||||||| |||||||||||| |  |||||||||||    
T  47292 tctttatccaaacggttatgctcattcccaaaataaatggccaaaatacccctg 47239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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