View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21035_low_2 (Length: 614)

Name: NF21035_low_2
Description: NF21035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21035_low_2
NF21035_low_2
[»] chr8 (12 HSPs)
chr8 (19-516)||(13004835-13005326)
chr8 (530-609)||(1514797-1514876)
chr8 (34-96)||(13111489-13111551)
chr8 (34-96)||(18671628-18671690)
chr8 (408-475)||(13005985-13006052)
chr8 (387-471)||(13121350-13121434)
chr8 (536-609)||(41179661-41179734)
chr8 (531-578)||(40530538-40530585)
chr8 (543-600)||(18168392-18168449)
chr8 (543-600)||(18631949-18632006)
chr8 (537-598)||(32825944-32826005)
chr8 (536-580)||(11254154-11254198)
[»] chr5 (16 HSPs)
chr5 (530-600)||(13086747-13086817)
chr5 (530-609)||(13015375-13015454)
chr5 (530-609)||(38010712-38010791)
chr5 (530-600)||(13478152-13478222)
chr5 (531-609)||(29989957-29990035)
chr5 (530-590)||(13421127-13421187)
chr5 (536-600)||(11607641-11607705)
chr5 (536-600)||(19357368-19357432)
chr5 (530-582)||(35622939-35622991)
chr5 (531-598)||(35622811-35622878)
chr5 (541-609)||(33858636-33858704)
chr5 (529-600)||(1826252-1826323)
chr5 (556-595)||(10292893-10292932)
chr5 (536-570)||(9827788-9827822)
chr5 (536-609)||(39570141-39570214)
chr5 (561-597)||(25379468-25379504)
[»] chr4 (19 HSPs)
chr4 (531-609)||(52012773-52012851)
chr4 (535-609)||(9799461-9799535)
chr4 (530-609)||(12473698-12473777)
chr4 (530-609)||(12528107-12528186)
chr4 (531-600)||(47943153-47943223)
chr4 (536-609)||(35869669-35869742)
chr4 (530-598)||(28092852-28092920)
chr4 (559-599)||(46719953-46719993)
chr4 (536-591)||(22343337-22343392)
chr4 (531-582)||(28092740-28092791)
chr4 (531-598)||(54277631-54277698)
chr4 (536-609)||(55590482-55590555)
chr4 (540-595)||(49998486-49998541)
chr4 (537-600)||(52910156-52910219)
chr4 (536-609)||(21260794-21260867)
chr4 (531-576)||(36634529-36634574)
chr4 (537-609)||(33249472-33249544)
chr4 (530-576)||(36634500-36634546)
chr4 (530-597)||(36821689-36821754)
[»] chr3 (24 HSPs)
chr3 (531-609)||(31187168-31187246)
chr3 (531-609)||(47186170-47186248)
chr3 (531-600)||(42664668-42664737)
chr3 (532-599)||(34029399-34029466)
chr3 (531-589)||(21963073-21963131)
chr3 (537-609)||(50934501-50934573)
chr3 (530-598)||(53440540-53440608)
chr3 (538-595)||(32319477-32319534)
chr3 (536-600)||(10018673-10018737)
chr3 (531-598)||(42273329-42273396)
chr3 (531-582)||(46489652-46489703)
chr3 (531-598)||(46489764-46489831)
chr3 (536-600)||(10179870-10179934)
chr3 (540-600)||(33509684-33509744)
chr3 (535-591)||(47426349-47426405)
chr3 (531-582)||(34955068-34955119)
chr3 (537-584)||(43689404-43689451)
chr3 (536-591)||(44380254-44380309)
chr3 (531-582)||(53440669-53440720)
chr3 (530-576)||(6053733-6053779)
chr3 (536-600)||(10123213-10123277)
chr3 (559-589)||(22136927-22136957)
chr3 (531-576)||(34955206-34955251)
chr3 (551-591)||(25859037-25859077)
[»] chr1 (14 HSPs)
chr1 (531-609)||(8809738-8809816)
chr1 (533-598)||(35998249-35998314)
chr1 (532-597)||(18056134-18056199)
chr1 (530-595)||(29119436-29119501)
chr1 (536-600)||(2569037-2569101)
chr1 (530-589)||(46435571-46435630)
chr1 (536-582)||(32676136-32676182)
chr1 (537-582)||(5581281-5581326)
chr1 (537-570)||(16679835-16679868)
chr1 (543-599)||(35534413-35534469)
chr1 (536-595)||(25161309-25161368)
chr1 (537-582)||(6223052-6223097)
chr1 (556-597)||(31953826-31953867)
chr1 (530-582)||(18056019-18056071)
[»] chr6 (8 HSPs)
chr6 (530-609)||(34245561-34245640)
chr6 (537-599)||(11113557-11113619)
chr6 (535-600)||(11753166-11753231)
chr6 (531-598)||(12800356-12800423)
chr6 (537-595)||(1211956-1212014)
chr6 (530-598)||(31030086-31030154)
chr6 (531-576)||(29879379-29879424)
chr6 (538-578)||(7234489-7234529)
[»] chr7 (3 HSPs)
chr7 (536-609)||(35341536-35341609)
chr7 (535-609)||(48250153-48250227)
chr7 (537-596)||(36776061-36776120)
[»] chr2 (9 HSPs)
chr2 (531-598)||(37811086-37811153)
chr2 (536-600)||(34392188-34392252)
chr2 (531-599)||(10163471-10163545)
chr2 (536-582)||(21603959-21604005)
chr2 (539-594)||(7381695-7381750)
chr2 (541-600)||(14565960-14566019)
chr2 (536-591)||(37358037-37358092)
chr2 (540-598)||(3668325-3668383)
chr2 (531-582)||(37811214-37811265)
[»] scaffold0032 (1 HSPs)
scaffold0032 (536-600)||(34194-34258)
[»] scaffold0464 (1 HSPs)
scaffold0464 (534-598)||(6422-6486)
[»] scaffold0229 (1 HSPs)
scaffold0229 (537-595)||(13118-13176)
[»] scaffold0163 (1 HSPs)
scaffold0163 (529-576)||(28119-28166)
[»] scaffold0519 (1 HSPs)
scaffold0519 (536-580)||(11195-11239)


Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Original strand, 13004835 - 13005326
Alignment:
Q  19 cataggacatcaatctctttcaatctaatggattatttctatgagaatcaaatgaactccaaccacattgttattttcacttatcatatatatttgcacc 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13004835 cataggacatcaatctctttcaatctaatggatgatttctatgagaatcaaatgaactccaaccacattgttattttcacttatcatatatatttgcacc 13004934  T
Q  119 cttgaatataactttgtttaaaataacaattgataggtttttcacttctagtctatgagttatcatcaaatagttgagtttgcaagctagattcacctat 218  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13004935 cttgaata--actttgtttaaaataacaattgataggtttttcacttctagtctatgagttatcatcaaatagttgagtttgcaagctagattcacctat 13005032  T
Q  219 ctctttaattagttctaacacaaatatctatcttgttgagtttaaacgtttataattatggaaaatactaaactgttttaattttatttcccttatttta 318  Q
    ||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13005033 ctctttaattagttctaacacaaatatcttt----ttgagtttaaacgtttataattatggaaaatactaaactgttttcattttatttcccttatttta 13005128  T
Q  319 agaatttaaaaatgtgaacaaaacaagtcgaaagtatttcgtgtttcacctttttatatttattattttggattgcatgatagaaaatgttaaggtagtt 418  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13005129 agaatttaaaaatgtgaacaaaacaagtcgaaagtatttcgtatttcacctttttatatttattattttggattgcatgatagaaaatgttaaggtagtt 13005228  T
Q  419 agactaagtactttgcactgcagttgcattgactggtagttgggtatggataatattagcaagttaaactgttgggaaaaagaaaaattaaggatcac 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13005229 agactaagtactttgcactgcagttgcattgactggtagttgggtatggataatattagcaagttaaactgttgggaaaaagaaaaattaaggatcac 13005326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 530 - 609
Target Start/End: Original strand, 1514797 - 1514876
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| ||||    
T  1514797 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttact 1514876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 13111551 - 13111489
Alignment:
Q  34 tctttcaatctaatggattatttctatgagaatcaaatgaactccaaccacattgttattttc 96  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13111551 tctttcaatctaatggattatttctttgagaatcaaatgaactccaaccacattgttattttc 13111489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 18671628 - 18671690
Alignment:
Q  34 tctttcaatctaatggattatttctatgagaatcaaatgaactccaaccacattgttattttc 96  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18671628 tctttcaatctaatggattatttctttgagaatcaaatgaactccaaccacattgttattttc 18671690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 408 - 475
Target Start/End: Original strand, 13005985 - 13006052
Alignment:
Q  408 ttaaggtagttagactaagtactttgcactgcagttgcattgactggtagttgggtatggataatatt 475  Q
    ||||||| |||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||||||    
T  13005985 ttaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataatatt 13006052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 471
Target Start/End: Complemental strand, 13121434 - 13121350
Alignment:
Q  387 tggattgcatgatagaaaatgttaaggtagttagactaagtactttgcactgcagttgcattgactggtagttgggtatggataa 471  Q
    |||| ||||||| || |||||||||||| |||||||||| | ||| ||| |||| |||||||||||||||||||| |||||||||    
T  13121434 tggactgcatgagaggaaatgttaaggttgttagactaaatgcttggcattgcaattgcattgactggtagttggctatggataa 13121350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 536 - 609
Target Start/End: Complemental strand, 41179734 - 41179661
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| | |||||| ||| |||| ||| ||||    
T  41179734 ccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttact 41179661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 578
Target Start/End: Complemental strand, 40530585 - 40530538
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgac 578  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||    
T  40530585 ggacaccacttgtgtaacattgagataccaatgttatataacattgac 40530538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 543 - 600
Target Start/End: Original strand, 18168392 - 18168449
Alignment:
Q  543 tgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    ||||||||||||||||||||| |||||| |||||| |||| ||||||| |||| ||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctacc 18168449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 543 - 600
Target Start/End: Original strand, 18631949 - 18632006
Alignment:
Q  543 tgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    ||||||||||||||||||||| |||||| |||||| |||| ||||||| |||| ||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctacc 18632006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 598
Target Start/End: Complemental strand, 32826005 - 32825944
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    ||||||||||||||||| ||| ||||||| |||| ||||| ||||| ||||| || ||||||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacata 32825944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 580
Target Start/End: Complemental strand, 11254198 - 11254154
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgacca 580  Q
    ||||||||||||||||||  |||||||| |||||| |||||||||    
T  11254198 ccacttgtgtaccattaaattaccaatgatatatatcattgacca 11254154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 530 - 600
Target Start/End: Original strand, 13086747 - 13086817
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13086747 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 13086817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 530 - 609
Target Start/End: Original strand, 13015375 - 13015454
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  13015375 cggataccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttact 13015454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 530 - 609
Target Start/End: Complemental strand, 38010791 - 38010712
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  38010791 cggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttact 38010712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 530 - 600
Target Start/End: Complemental strand, 13478222 - 13478152
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13478222 cggacaccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacatacc 13478152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 531 - 609
Target Start/End: Original strand, 29989957 - 29990035
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  29989957 ggacaccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttact 29990035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 530 - 590
Target Start/End: Complemental strand, 13421187 - 13421127
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgt 590  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  13421187 cggacatcacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgt 13421127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 536 - 600
Target Start/End: Complemental strand, 11607705 - 11607641
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    |||||||| ||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||    
T  11607705 ccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctacc 11607641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 536 - 600
Target Start/End: Complemental strand, 19357432 - 19357368
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    ||||||||||||||||| |||||||||| |||||| ||||| ||||| |||||||||||| ||||    
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctacc 19357368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 530 - 582
Target Start/End: Complemental strand, 35622991 - 35622939
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 582  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  35622991 cggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 35622939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 598
Target Start/End: Original strand, 35622811 - 35622878
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    |||||||||||||||||||||  | |||||||||||||||||||||  |||| | |||||||||||||    
T  35622811 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 35622878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 541 - 609
Target Start/End: Complemental strand, 33858704 - 33858636
Alignment:
Q  541 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    ||||||||||||||||||||||  |||||| ||||||||||| | |||||||||| |||| ||| ||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttact 33858636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 529 - 600
Target Start/End: Original strand, 1826252 - 1826323
Alignment:
Q  529 ccggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    ||||| ||||||||||||||||||| ||||||||| |||||| |||||  |||| |||||||| ||| ||||    
T  1826252 ccggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctacc 1826323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 556 - 595
Target Start/End: Original strand, 10292893 - 10292932
Alignment:
Q  556 taccaatgttatataacattgaccaataagagtgtgccac 595  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  10292893 taccaatgttatataacattggccaataagaatgtgccac 10292932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 570
Target Start/End: Original strand, 9827788 - 9827822
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatata 570  Q
    |||||||||||||||||||||||||||| ||||||    
T  9827788 ccacttgtgtaccattaaggtaccaatggtatata 9827822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 609
Target Start/End: Complemental strand, 39570214 - 39570141
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    ||||||||||| |||||| ||| ||||| |||||| ||||| ||||| |||||||| ||| |||| ||| ||||    
T  39570214 ccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttact 39570141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 597
Target Start/End: Original strand, 25379468 - 25379504
Alignment:
Q  561 atgttatataacattgaccaataagagtgtgccacat 597  Q
    |||||||||||||||| |||||||| |||||||||||    
T  25379468 atgttatataacattgtccaataagggtgtgccacat 25379504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 531 - 609
Target Start/End: Original strand, 52012773 - 52012851
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  52012773 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttact 52012851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 535 - 609
Target Start/End: Complemental strand, 9799535 - 9799461
Alignment:
Q  535 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| ||||    
T  9799535 accacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttact 9799461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 609
Target Start/End: Original strand, 12473698 - 12473777
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||| ||||||||| ||||||||||||||||||| |||||| ||||| ||||| |||||||||||| |||| ||| ||||    
T  12473698 cggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttact 12473777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 609
Target Start/End: Original strand, 12528107 - 12528186
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||| ||||||||| ||||||||||||||||||| |||||| ||||| ||||| |||||||||||| |||| ||| ||||    
T  12528107 cggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttact 12528186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 531 - 600
Target Start/End: Original strand, 47943153 - 47943223
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataaca-ttgaccaataagagtgtgccacatacc 600  Q
    |||||||||||||||||||||||  |||||||||||||||| | ||||||||||| | |||||||||||||    
T  47943153 ggacaccacttgtgtaccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacatacc 47943223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 536 - 609
Target Start/End: Complemental strand, 35869742 - 35869669
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| | | |||||||| |||| ||| ||||    
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttact 35869669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 530 - 598
Target Start/End: Complemental strand, 28092920 - 28092852
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||  |||| | |||||||||||||    
T  28092920 cggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 28092852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 559 - 599
Target Start/End: Original strand, 46719953 - 46719993
Alignment:
Q  559 caatgttatataacattgaccaataagagtgtgccacatac 599  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46719953 caatgttatataacattgaccaataagagtgtgccacatac 46719993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 536 - 591
Target Start/End: Original strand, 22343337 - 22343392
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtg 591  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||| ||||||||    
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtg 22343392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 582
Target Start/End: Original strand, 28092740 - 28092791
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 582  Q
    |||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  28092740 ggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 28092791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 598
Target Start/End: Complemental strand, 54277698 - 54277631
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    |||||||||||||||||||||  | |||||||||||||||||||||  |||| | |||||||||||||    
T  54277698 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 54277631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 536 - 609
Target Start/End: Original strand, 55590482 - 55590555
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||||||||||||||||||||||||||| |||||| |||||| |||| | |||||| ||| |||| ||| ||||    
T  55590482 ccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttact 55590555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 595
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  540 ttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccac 595  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||| || |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 600
Target Start/End: Complemental strand, 52910219 - 52910156
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||||| | |||||||||| ||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctacc 52910156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 536 - 609
Target Start/End: Original strand, 21260794 - 21260867
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||||| | ||||||||||||||||||| |||||| ||||| ||||| |||||||| ||| |||| ||| ||||    
T  21260794 ccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttact 21260867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 531 - 576
Target Start/End: Complemental strand, 36634574 - 36634529
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattg 576  Q
    |||||||||||||||||||||  | |||||||||||||||||||||    
T  36634574 ggacaccacttgtgtaccattgggataccaatgttatataacattg 36634529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 609
Target Start/End: Complemental strand, 33249544 - 33249472
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||||||||||||||||||||| |||| ||||||  |||| ||||| |||||||| ||| |||| ||| ||||    
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttact 33249472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 576
Target Start/End: Original strand, 36634500 - 36634546
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattg 576  Q
    |||||||| |||||||||||||  | |||||||||||||||||||||    
T  36634500 cggacaccgcttgtgtaccattgggataccaatgttatataacattg 36634546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 597
Target Start/End: Original strand, 36821689 - 36821754
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacat 597  Q
    ||||||||||||||||  ||||  | ||||||||||||||||||||| ||||| |  |||||||||||    
T  36821689 cggacaccacttgtgt--cattgggataccaatgttatataacattggccaatgaaggtgtgccacat 36821754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 531 - 609
Target Start/End: Complemental strand, 31187246 - 31187168
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  31187246 ggacaccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttact 31187168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 531 - 609
Target Start/End: Original strand, 47186170 - 47186248
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  47186170 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttact 47186248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 531 - 600
Target Start/End: Original strand, 42664668 - 42664737
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42664668 ggacaccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacatacc 42664737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 532 - 599
Target Start/End: Complemental strand, 34029466 - 34029399
Alignment:
Q  532 gacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatac 599  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34029466 gacaccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatac 34029399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 531 - 589
Target Start/End: Complemental strand, 21963131 - 21963073
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtg 589  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  21963131 ggacatcacttatgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 537 - 609
Target Start/End: Original strand, 50934501 - 50934573
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| |||| ||| ||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttact 50934573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 598
Target Start/End: Original strand, 53440540 - 53440608
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    ||||||||||||||||||||||  | |||||||||||||||||| |||||||| | |||||||||||||    
T  53440540 cggacaccacttgtgtaccattgggataccaatgttatataacactgaccaatgaaagtgtgccacata 53440608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 595
Target Start/End: Complemental strand, 32319534 - 32319477
Alignment:
Q  538 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccac 595  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccac 32319477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 536 - 600
Target Start/End: Complemental strand, 10018737 - 10018673
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    |||||||||||||||||| |||||||||||||||| |||||  |||||| |||||||||| ||||    
T  10018737 ccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctacc 10018673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 598
Target Start/End: Original strand, 42273329 - 42273396
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    |||||||||||||||||||||  | |||||||||||||||||||||  |||| | |||||||||||||    
T  42273329 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 42273396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 582
Target Start/End: Original strand, 46489652 - 46489703
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 582  Q
    |||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  46489652 ggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 46489703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 598
Target Start/End: Complemental strand, 46489831 - 46489764
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    |||||||||||||||||||||  | |||||||||||||||||||||  |||| | |||||||||||||    
T  46489831 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 46489764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 536 - 600
Target Start/End: Complemental strand, 10179934 - 10179870
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    |||||||||||||||||| ||||||||| |||||| |||||  |||| |||||||||||| ||||    
T  10179934 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctacc 10179870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 540 - 600
Target Start/End: Original strand, 33509684 - 33509744
Alignment:
Q  540 ttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    ||||||||||||||||||| |||  |||||| ||||||||||| |||||||||||| ||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctacc 33509744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 535 - 591
Target Start/End: Original strand, 47426349 - 47426405
Alignment:
Q  535 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtg 591  Q
    ||||||||||||||||||||||||||||  |||||| ||||| ||||| ||||||||    
T  47426349 accacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtg 47426405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 582
Target Start/End: Original strand, 34955068 - 34955119
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 582  Q
    |||||||||||||||||||||  | ||||||||||||||||||||| |||||    
T  34955068 ggacaccacttgtgtaccattgggataccaatgttatataacattggccaat 34955119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 584
Target Start/End: Original strand, 43689404 - 43689451
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataa 584  Q
    |||||||||||||||  | |||||||||||||||||||||||||||||    
T  43689404 cacttgtgtaccattgtgataccaatgttatataacattgaccaataa 43689451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 591
Target Start/End: Original strand, 44380254 - 44380309
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtg 591  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||| | ||||||    
T  44380254 ccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtg 44380309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 582
Target Start/End: Complemental strand, 53440720 - 53440669
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 582  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||| ||||    
T  53440720 ggacacctcttgtgtaccattaggataccaatgttatataacattgatcaat 53440669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 576
Target Start/End: Complemental strand, 6053779 - 6053733
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattg 576  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||    
T  6053779 cggacaccacttgtgtaccattgggataccaatgttatataacattg 6053733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 600
Target Start/End: Complemental strand, 10123277 - 10123213
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    |||||||||||||||||| ||| |||||||||||| || ||  |||||| |||||||||| ||||    
T  10123277 ccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctacc 10123213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 589
Target Start/End: Complemental strand, 22136957 - 22136927
Alignment:
Q  559 caatgttatataacattgaccaataagagtg 589  Q
    |||||||||||||||||||||||||||||||    
T  22136957 caatgttatataacattgaccaataagagtg 22136927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 576
Target Start/End: Complemental strand, 34955251 - 34955206
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattg 576  Q
    ||||||||||||| ||||||| || || ||||||||||||||||||    
T  34955251 ggacaccacttgtctaccattgagatatcaatgttatataacattg 34955206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 591
Target Start/End: Complemental strand, 25859077 - 25859037
Alignment:
Q  551 taaggtaccaatgttatataacattgaccaataagagtgtg 591  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  25859077 taagctaccaatgttatataacattggccaattagagtgtg 25859037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 531 - 609
Target Start/End: Complemental strand, 8809816 - 8809738
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  8809816 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttact 8809738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 533 - 598
Target Start/End: Original strand, 35998249 - 35998314
Alignment:
Q  533 acaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  35998249 acaccacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacata 35998314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 532 - 597
Target Start/End: Complemental strand, 18056199 - 18056134
Alignment:
Q  532 gacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacat 597  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||| | ||||||||||||    
T  18056199 gacaccacttgtgtaccattaaactaccaatgttatataatattgaccaatgaaagtgtgccacat 18056134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 530 - 595
Target Start/End: Complemental strand, 29119501 - 29119436
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccac 595  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||    
T  29119501 cggataccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccac 29119436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 536 - 600
Target Start/End: Original strand, 2569037 - 2569101
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| |||||||||||| ||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctacc 2569101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 589
Target Start/End: Complemental strand, 46435630 - 46435571
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtg 589  Q
    |||| ||||||||||||||||||||||||||||| ||||||  |||| ||||| ||||||    
T  46435630 cggataccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 536 - 582
Target Start/End: Original strand, 32676136 - 32676182
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 582  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||    
T  32676136 ccacttgtgtaccattaaggtaccaatggtatataccattggccaat 32676182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 5581281 - 5581326
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatataacattgaccaat 582  Q
    |||||||||||||||| | ||| |||||||||||||||||||||||    
T  5581281 cacttgtgtaccattaggatactaatgttatataacattgaccaat 5581326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 570
Target Start/End: Complemental strand, 16679868 - 16679835
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatata 570  Q
    ||||||||||||||||||||||||||||||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatata 16679835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 35534413 - 35534469
Alignment:
Q  543 tgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatac 599  Q
    |||| ||||||| |||||||||||||||||||||  || | ||||||||||||||||    
T  35534413 tgtatcattaagataccaatgttatataacattggacactgagagtgtgccacatac 35534469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 595
Target Start/End: Original strand, 25161309 - 25161368
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccac 595  Q
    |||||||||||||||||| ||  ||||| |||||| ||||||||||| | ||||||||||    
T  25161309 ccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccac 25161368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 6223052 - 6223097
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatataacattgaccaat 582  Q
    ||||||||||||||||| ||| |||||||||||| |||||| ||||    
T  6223052 cacttgtgtaccattaaagtatcaatgttatatatcattgatcaat 6223097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 597
Target Start/End: Original strand, 31953826 - 31953867
Alignment:
Q  556 taccaatgttatataacattgaccaataagagtgtgccacat 597  Q
    ||||||||||||||||||||||||||| |  |||||||||||    
T  31953826 taccaatgttatataacattgaccaatgaaggtgtgccacat 31953867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 582
Target Start/End: Original strand, 18056019 - 18056071
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 582  Q
    ||||||| |||||||||||| |  | || ||||||||||||||||||||||||    
T  18056019 cggacacgacttgtgtaccactgggatatcaatgttatataacattgaccaat 18056071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 530 - 609
Target Start/End: Original strand, 34245561 - 34245640
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| |||| ||| ||||    
T  34245561 cggacaccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttact 34245640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 537 - 599
Target Start/End: Original strand, 11113557 - 11113619
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatac 599  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatac 11113619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 600
Target Start/End: Original strand, 11753166 - 11753231
Alignment:
Q  535 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    ||||||||||||||||||||||||||||| |||||| ||| | ||||| ||||||| |||| ||||    
T  11753166 accacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacc 11753231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 598
Target Start/End: Complemental strand, 12800423 - 12800356
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    |||||||||||||||||||||  | ||||||||||||||||||||| | ||| |  ||||||||||||    
T  12800423 ggacaccacttgtgtaccattgggataccaatgttatataacattggctaatgaaggtgtgccacata 12800356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 1212014 - 1211956
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccac 595  Q
    ||||||||||||||||||||||||||| |||||| ||||| | ||| || |||||||||    
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccac 1211956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 598
Target Start/End: Original strand, 31030086 - 31030154
Alignment:
Q  530 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    ||||||||||||| ||||| ||  | |||||||||||||||| ||||  |||||| |||||||||||||    
T  31030086 cggacaccacttgcgtaccgttgggataccaatgttatataatattggtcaataacagtgtgccacata 31030154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 576
Target Start/End: Complemental strand, 29879424 - 29879379
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattg 576  Q
    |||||||||||||||||||||  | |||||||| ||||||||||||    
T  29879424 ggacaccacttgtgtaccattgggataccaatgctatataacattg 29879379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 578
Target Start/End: Complemental strand, 7234529 - 7234489
Alignment:
Q  538 acttgtgtaccattaaggtaccaatgttatataacattgac 578  Q
    ||||||||| |||||||||||||| |||||||| |||||||    
T  7234529 acttgtgtatcattaaggtaccaacgttatatatcattgac 7234489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 536 - 609
Target Start/End: Original strand, 35341536 - 35341609
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| |||| ||| ||||    
T  35341536 ccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttact 35341609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 609
Target Start/End: Original strand, 48250153 - 48250227
Alignment:
Q  535 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacctatgctact 609  Q
    ||||||||||||||||||||||||||||| |||||| |||||  |||| |||||||||||| |||| ||| ||||    
T  48250153 accacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttact 48250227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 596
Target Start/End: Complemental strand, 36776120 - 36776061
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccaca 596  Q
    |||||| ||||||||||||||||  |||||||||||||||   ||| |||||||||||||    
T  36776120 cacttgcgtaccattaaggtaccgctgttatataacattggtgaattagagtgtgccaca 36776061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 531 - 598
Target Start/End: Original strand, 37811086 - 37811153
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    |||||||||||||||||||||  | ||||||||||||||||||||| ||||| | |||||||||||||    
T  37811086 ggacaccacttgtgtaccattgggataccaatgttatataacattggccaatgaaagtgtgccacata 37811153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 536 - 600
Target Start/End: Complemental strand, 34392252 - 34392188
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    |||||||||||||||| ||||||||||| |||||| ||||| ||||| |||||||||||| ||||    
T  34392252 ccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctacc 34392188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 599
Target Start/End: Original strand, 10163471 - 10163545
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtac------caatgttatataacattgaccaataagagtgtgccacatac 599  Q
    ||||||||||| ||||||||||||||||      |||||||||||||||||||||||||| | ||||||||||||    
T  10163471 ggacaccacttatgtaccattaaggtacctgtaccaatgttatataacattgaccaataaaaatgtgccacatac 10163545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 536 - 582
Target Start/End: Original strand, 21603959 - 21604005
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 582  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||    
T  21603959 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaat 21604005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 539 - 594
Target Start/End: Original strand, 7381695 - 7381750
Alignment:
Q  539 cttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgcca 594  Q
    ||||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgcca 7381750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 600
Target Start/End: Complemental strand, 14566019 - 14565960
Alignment:
Q  541 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    ||||||||| |||||||||||||||||||| |||||| |||  ||||||||| |||||||    
T  14566019 tgtgtaccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacatacc 14565960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 591
Target Start/End: Complemental strand, 37358092 - 37358037
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtg 591  Q
    ||||||||||| |||||||||||||||| |||||| ||||||| ||| ||||||||    
T  37358092 ccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtg 37358037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 540 - 598
Target Start/End: Complemental strand, 3668383 - 3668325
Alignment:
Q  540 ttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    ||||||| ||||||||||||||||||||||||||||||    |||||||||| ||||||    
T  3668383 ttgtgtatcattaaggtaccaatgttatataacattgattggtaagagtgtgtcacata 3668325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 531 - 582
Target Start/End: Complemental strand, 37811265 - 37811214
Alignment:
Q  531 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 582  Q
    ||||||| |||||||||||||  | |||||||||||||||||||||| ||||    
T  37811265 ggacacctcttgtgtaccattgggataccaatgttatataacattgatcaat 37811214  T

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Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 536 - 600
Target Start/End: Original strand, 34194 - 34258
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 600  Q
    |||||||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||| ||||    
T  34194 ccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttacc 34258  T

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Target: scaffold0464 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 534 - 598
Target Start/End: Original strand, 6422 - 6486
Alignment:
Q  534 caccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacata 598  Q
    ||||||||||||||||||  | || |||||||||||||||||| |||||||  ||||||||||||    
T  6422 caccacttgtgtaccattgggatatcaatgttatataacattggccaataaaggtgtgccacata 6486  T

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Target: scaffold0229 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 13176 - 13118
Alignment:
Q  537 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccac 595  Q
    ||||||||||||||||||||||||||| |||||| ||||| | ||| || |||||||||    
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccac 13118  T

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Target: scaffold0163 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 576
Target Start/End: Complemental strand, 28166 - 28119
Alignment:
Q  529 ccggacaccacttgtgtaccattaaggtaccaatgttatataacattg 576  Q
    ||||||||||||||||||||||| || |||| ||||||||||| ||||    
T  28166 ccggacaccacttgtgtaccattgagataccgatgttatataatattg 28119  T

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Target: scaffold0519 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 580
Target Start/End: Original strand, 11195 - 11239
Alignment:
Q  536 ccacttgtgtaccattaaggtaccaatgttatataacattgacca 580  Q
    ||||||||||||||||||  |||||||| |||||| |||||||||    
T  11195 ccacttgtgtaccattaaattaccaatgatatatatcattgacca 11239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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