View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_high_1 (Length: 617)
Name: NF21036_high_1
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 63 - 581
Target Start/End: Complemental strand, 40424757 - 40424242
Alignment:
| Q |
63 |
acagtgatattgatctctcaaattagtcgattttgaattgaacatcaagttttaat----tatnnnnnnnnnnnnnnnggagaatagatcaagaacaagc |
158 |
Q |
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| T |
40424757 |
acagtgatattgatctttcaaattagtcgattttgaattgaatatcaagttttaataaaaaaaaaaaaaaaaaaaaggggagaatgggtcaagaacaagc |
40424658 |
T |
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| Q |
159 |
tggaatacatacgaaatatggaccgagattaatataactttatgatagtccatatatccccaattatgaggattataagagcgaaatgtttaagatgata |
258 |
Q |
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| T |
40424657 |
tggaatacatacgaa--------cgagattaatataattttatgatagtccatatatccccaattatgaggattataagagcgaaatgtttaagatgata |
40424566 |
T |
|
| Q |
259 |
aacttacaagaacgagttggctgtgtc----tatgtatgtatatattagtcttttgnnnnnnnnnnnnnnnnttagactatgaaaggaatctgtatagta |
354 |
Q |
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| T |
40424565 |
aacttacaagaacgagttggctgtgtctatgtatgtatgtatatattagtcttttgaaaagaaaagaaaaaattagactatgaaaggaatctgtatagta |
40424466 |
T |
|
| Q |
355 |
tattatttttattattactccgcaggtatattggattatatgacaacaagaacaagaccgtctggatcgtagaacattgcattgtcttgggcggctgtac |
454 |
Q |
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| T |
40424465 |
tatta---ttattattactccgcaggtatattggattatatgacaacaagaacaagaccgtctggatcgtagaacattgcattgtcttgggcggctgtac |
40424369 |
T |
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| Q |
455 |
gggaaaacatatctagcaacttacg--tacacacatcctctgtacattaattgtccttttcgcaactattttttggtcagattccgttgccgttatctac |
552 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
40424368 |
gggaaaacatatctagcaacttacgtatacacacatcctctgtacattaattgtccttttcggaacta--ttttggtcagattccgttgccgttatctac |
40424271 |
T |
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| Q |
553 |
caatatgatttaatctttgactcgttcat |
581 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40424270 |
caatatgatttaatctttgactcgttcat |
40424242 |
T |
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