View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_high_12 (Length: 427)
Name: NF21036_high_12
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 43340248 - 43339845
Alignment:
| Q |
12 |
acagaaccagccactaccaacatcaaaagcagtcgacgatcatataccacggatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43340248 |
acagaaccagccactaccaacatcaaaagcagtcgacgatcatataccacggatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtg |
43340149 |
T |
|
| Q |
112 |
ttcaatccctccct----acacataaaccaagaccaagataggcttctgatatggtcaaccacctctaaataatttgcaaccttcctgttaaaaataaca |
207 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43340148 |
ttcaatccctccctccctacacataaaccaagaccaagataggctcttgatatggtcaaccacctctaaataatttgcaaccttcctgttaaaaataaca |
43340049 |
T |
|
| Q |
208 |
ttatttcgctccaaccacatgcaccaagccgttgttaaccacaataaatgcgatacnnnnnnnacttttcttacctttgcaaattggattgaattaatga |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43340048 |
ttatttcgctccaaccacatgcaccaagccgttgttaaccacactaaatgcgatactttttttacttttcttacctttgcaaattggattgaattaatga |
43339949 |
T |
|
| Q |
308 |
aagttgtttactacatcaccatctcaaaccttcagcccccactcccaaccaattaaaaatcaagctctacgcttccaacatctctgagcaaattgcaaac |
407 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
43339948 |
aagttgtttactacatcaccatcccaaaccttcagcccccactcccaaccaattaaaaatcaagctccacgcttccaacgtctctgagcaagttgcaaac |
43339849 |
T |
|
| Q |
408 |
aaat |
411 |
Q |
| |
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|||| |
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| T |
43339848 |
aaat |
43339845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 63 - 374
Target Start/End: Original strand, 1014699 - 1015009
Alignment:
| Q |
63 |
gatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtgttcaatccctccctacacataaaccaagaccaagataggcttctgatatgg |
162 |
Q |
| |
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||||||||||||||||||||||||||||| ||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| | |
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| T |
1014699 |
gatacaaacaagtggattcaaccaccaataggatcatcgaaagttcgtgttgaacccctccctacacataaaccaagaccaagataggtgtttgatagga |
1014798 |
T |
|
| Q |
163 |
tcaaccacctctaaataatttgcaaccttcctgttaaaaataacattatttcgctccaaccacatgcaccaagccgttgttaaccacaataaatgcgata |
262 |
Q |
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||||||||||||||| |||| |||||| || ||||||| |||||||| ||||||||||| || |||||||| ||||||| ||||| ||||||||||| |
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| T |
1014799 |
tcaaccacctctaaacaattcacaacctaccatttaaaaagaacattataacgctccaaccaaatacaccaagctgttgttagccacactaaatgcgata |
1014898 |
T |
|
| Q |
263 |
cnnnnnnnacttttcttacctttgcaaattggattgaattaatgaaagttgtttactacatcaccatctcaaaccttcagcccccactcccaaccaatta |
362 |
Q |
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| || ||||||||| | |||||||| ||||||| || | ||||||||| |||||| || ||| | ||||||||||| |||||||||| |||||| |
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| T |
1014899 |
ctttttttacctttcttaccctcgcaaattgaattgaataaaaggaagttgtttgctacataacaatc-ccaaccttcagcctccactcccaatcaatta |
1014997 |
T |
|
| Q |
363 |
aaaatcaagctc |
374 |
Q |
| |
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||||||||||| |
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|
| T |
1014998 |
caaatcaagctc |
1015009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 8726691 - 8726591
Alignment:
| Q |
163 |
tcaaccacctctaaataatttgcaaccttcctgttaaaaataacattatttcgctccaaccacatgcaccaagccgttgttaaccacaataaatgcgata |
262 |
Q |
| |
|
||||||||||| || |||| || |||||||||||||||| || || ||||| ||||||| ||||| |||||||| | ||||||| |||||| |||| |
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| T |
8726691 |
tcaaccacctccaagcaattggccaccttcctgttaaaaagaatgttgtttcgtcccaaccaaatgcatgaagccgttatcaaccacactaaatgtgata |
8726592 |
T |
|
| Q |
263 |
c |
263 |
Q |
| |
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| |
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|
| T |
8726591 |
c |
8726591 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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