View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_high_17 (Length: 403)
Name: NF21036_high_17
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_high_17 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 2910100 - 2910484
Alignment:
| Q |
19 |
ctccgatgagttcccagcgtctccactctcactccaatccatcgcctccgtcagtaaccctccccgacgaggttctcaccgaaatcctatcccgccttcc |
118 |
Q |
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||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2910100 |
ctccgatgagttcccggcatctccactctcactccaatccatcacctccgtcagtaaccctccccgacgaggttctcaccgaaatcctatcccgccttcc |
2910199 |
T |
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| Q |
119 |
agtcaaatctctaaatcagatgaaatccgtatgtaagtcatggaaaaccctaatttcgcatccttcattcatcaatatccatcttaatcattcattatct |
218 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2910200 |
agtcaaatctctaattcagatgaaatccgtatgtaagtcatggaaaaccctaatttcgcatccttcattcatcaaaatccatcttaatcattcattatct |
2910299 |
T |
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| Q |
219 |
tcacaaaatccatactcttatcttttctatgtcaataactggacacagaatcataagtacgttttcattccctttcccgtcaatcatttactcgaaaacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2910300 |
tcacaaaatccatactcttatcttttctatgtcaataactggacacagaatcataagtacgttttcattccctttcccgtcaatcatttactcgaaaacc |
2910399 |
T |
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| Q |
319 |
atcctatcacccttcctgaaaatccttacttcatattgaatggcgacaaagattgtcacgaggttgttggttcttgcaatggatt |
403 |
Q |
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| T |
2910400 |
atcctatcacccttcctgaagatccttacttcatattgaatggcgacaaagattgtcacgaggttgttggttcttgcaatggatt |
2910484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 2907090 - 2907143
Alignment:
| Q |
19 |
ctccgatgagttcccagcgtctccactctcactccaatccatcgcctccgtcag |
72 |
Q |
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| T |
2907090 |
ctccgatgagttcccggcgtctccgctctcactccaaaccatcaccgccgtcag |
2907143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 7308624 - 7308560
Alignment:
| Q |
66 |
ccgtcagtaaccctccccgacgaggttctcaccgaaatcctatcccgccttccagtcaaatctct |
130 |
Q |
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| T |
7308624 |
ccgtcagtaatcctccccgacgagcttatcaccaaaatcttatcctggcttcaagtcaaatctct |
7308560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 42297246 - 42297336
Alignment:
| Q |
51 |
tccaatccatcgcctccgtcagtaaccctccccgacgaggttctcaccgaaatcctatcccgccttccagtcaaatctctaaatcagatgaaat |
144 |
Q |
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| T |
42297246 |
tccaatccatcgcc---gtcagtaatcctccccgacgagcttatcaccgaaatattatcatggcttccagtgaaatctctgatgcagatgaaat |
42297336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 7721 - 7843
Alignment:
| Q |
71 |
agtaaccctccccgacgaggttctcaccgaaatcctatcccgccttccagtcaaatctctaaatcagatgaaatccgtatgtaagtcatggaaaacccta |
170 |
Q |
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||||| |||||| |||||||| |||| ||||| ||||| | ||||| ||||||||||| | || ||||| | ||| |||||||||||||||| || |
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| T |
7721 |
agtaatcctccctaacgaggttatcactgaaatactatcgtggcttccggtcaaatctcttatgcaaatgaagtgcgtcagtaagtcatggaaaactctt |
7820 |
T |
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| Q |
171 |
atttcgcatccttcattcatcaa |
193 |
Q |
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| T |
7821 |
atctctcatcctccattcatcaa |
7843 |
T |
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