View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_high_18 (Length: 401)
Name: NF21036_high_18
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 99 - 384
Target Start/End: Complemental strand, 26468540 - 26468255
Alignment:
| Q |
99 |
tattcatactaaaggaatttaagaccacatttaacttagagtagccattaaagaaagttttacgcattttctcgatttataactttctgatttaaatgta |
198 |
Q |
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| T |
26468540 |
tattcatactaaaggaatttaagaccacatttaacttagagtagcctttaaaaaaagttttacgtattttctcgatttatacctttctgatttaaatgtg |
26468441 |
T |
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| Q |
199 |
accacgtaaaactcatcattagtggtcatgtcatcaattgagataaagtcattatttaaataaacgttatgcatacatttcaaaaattggtaagaattat |
298 |
Q |
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| T |
26468440 |
accacgtaaaactcatcattagtggtcatgtcatcgattgagataaagtcattatttaaataaacgttatgcatacattccaaaaattggtaagaattat |
26468341 |
T |
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| Q |
299 |
catatcatgaacaaaattgagatttgaaattacagcaacgtgaattgaatccatggactttgttgcactgcatatcacctattgtc |
384 |
Q |
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| T |
26468340 |
catatcatgaacaaaattgagatttgaaattacagcgacgtgaattgaatccatggactttgttgcactgcatatcacctattgtc |
26468255 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 6348582 - 6348494
Alignment:
| Q |
236 |
ttgagataaagtcattatttaaataaacgttatgcatacatttcaa-aaattggtaagaattatcatatcatgaacaaaattgagattt |
323 |
Q |
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|||||||||||||||||| |||| ||| |||| ||||| |||||| | |||| ||| ||| |||||||||||| || |||||||||| |
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| T |
6348582 |
ttgagataaagtcattatcaaaatcaaccttatccatacctttcaattatttggcaagtattttcatatcatgaataacattgagattt |
6348494 |
T |
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