View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_high_20 (Length: 376)
Name: NF21036_high_20
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 5678123 - 5678470
Alignment:
| Q |
20 |
aaataaacattaacaattgattgacaagtgacatcttacaagattaagaaatcattactcttcacttgaatgattcaaagcaaataagtttgatatatat |
119 |
Q |
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| T |
5678123 |
aaataaacattaacaattgattgacaagtgacatcttacaagattaagaaatcattactcttcacttgaatgattcaaagcaaataagtttgatatatat |
5678222 |
T |
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| Q |
120 |
tatatctatgcagcaaagagccactaccttatgtaaagtaaaggaagattctccaatttggacattgacatcacttggaatctcctgagaaaaaatccta |
219 |
Q |
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| T |
5678223 |
tatatctatgcagcaaagagtcactaccttatgtaaagtaaaggaagattcaccaatttggacattgacatcacttggaatctcctgagaaaaaatccta |
5678322 |
T |
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| Q |
220 |
taattaagcaatacaactcattggtttcagttactaaaatccaacaaaagttagcaaacaagaacatgcacaagaaaagtgtcaagtacatttgacatat |
319 |
Q |
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| T |
5678323 |
taattaagcaatacaactcattggtttcagttactaaaatccaacaaaagttagcaaacaagaacatgcacaagaaaagtgtcaagtacatttgacatat |
5678422 |
T |
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| Q |
320 |
atatacataaacat--nnnnnnntataccagtcacttgttcttttcat |
365 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |
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| T |
5678423 |
atatacataaacataaaaaaaaatataccagtcacttgttcttttcat |
5678470 |
T |
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