View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21036_high_28 (Length: 289)

Name: NF21036_high_28
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21036_high_28
NF21036_high_28
[»] chr3 (1 HSPs)
chr3 (1-289)||(41603285-41603573)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 41603285 - 41603573
Alignment:
Q  1 ctgtctgcaaatcgatttttctcattctcattcctgaagagtgctagctggaattcttcctagaaataataatatttttgtagaagagattaggcacctg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41603285 ctgtctgcaaatagatttttctcattctcattcctgaagagtgctagctggaattcttcctagaaataataatatttttgtagaagagattaggcacctg 41603384  T
Q  101 aattaagggcattttatctaaactaattnnnnnnntttaaaagaaaatacttaactaaccttatgaataagaccatcttcaataattgaattgcttaact 200  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41603385 aattaagggcattttatctaaactaattaaaaaactttaaaagaaaatacttaactaaccttatgaataagaccatcttcaataattgaattgcttaact 41603484  T
Q  201 tcaaaaagagttcatataacgcctctacttcactcacagtaactgtgaaaacagacagaaagatataaaacttgttttaatcaacttta 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41603485 tcaaaaagagttcatataacgcctctacttcactcacagtaactgtgaaaacagacagaaagatagaaaacttgttttaatcaacttta 41603573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University