View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21036_high_3 (Length: 589)

Name: NF21036_high_3
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21036_high_3
NF21036_high_3
[»] chr4 (21 HSPs)
chr4 (27-569)||(5035207-5035751)
chr4 (26-564)||(2525339-2525881)
chr4 (26-419)||(2533897-2534294)
chr4 (30-507)||(2490716-2491195)
chr4 (30-486)||(2518821-2519279)
chr4 (163-506)||(2486021-2486373)
chr4 (430-502)||(2536575-2536647)
chr4 (112-310)||(2467212-2467413)
chr4 (356-507)||(2467446-2467597)
chr4 (119-251)||(2547221-2547353)
chr4 (113-236)||(2621417-2621540)
chr4 (191-236)||(2361217-2361262)
chr4 (191-240)||(2381641-2381690)
chr4 (191-240)||(2391269-2391318)
chr4 (191-231)||(12124594-12124634)
chr4 (191-221)||(2482529-2482559)
chr4 (433-507)||(5106306-5106380)
chr4 (118-172)||(5106632-5106686)
chr4 (30-75)||(2477156-2477201)
chr4 (120-172)||(2367981-2368033)
chr4 (196-247)||(2393836-2393888)
[»] chr2 (1 HSPs)
chr2 (455-499)||(44575183-44575227)


Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 27 - 569
Target Start/End: Original strand, 5035207 - 5035751
Alignment:
Q  27 agttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttct 126  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  5035207 agttaaagcaatcctgcggagtttgggaagcgctaagaattgatcatcactatctatagcacaattatggggacaaccagtatcagtaaggattagttct 5035306  T
Q  127 tcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttgg 226  Q
    |||||  ||||||||||||||||||| | |   ||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||||||||| ||    
T  5035307 tcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgataaatctcatttgataacaagcgagagacgttaaacttttcatcttctcgg 5035406  T
Q  227 acaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgcc 326  Q
    |||||||||| |||||||||||||| || ||| ||| |||||| |||||||| |||||||||| |||||||||||  |||||||  ||||||||||||||    
T  5035407 acaaagctcgcaactcattttcaggaaccctgacagcgtggtaaagagtgagcgatttgaggtttaaaggggaagcggagattttcgctagaaactcgcc 5035506  T
Q  327 gaggtcggcttctcggtccc--ccttaaggagagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgta 424  Q
    |||||  |||||||||  ||   | |  | || |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||     
T  5035507 gaggtgagcttctcgggaccaggcattggaagtgagagtgatattgagtgatgtaatattagggaacctttcaaagagacgactaaggaaagggattgtt 5035606  T
Q  425 gctttggagattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaactactgttggtgatggaca 524  Q
    || |  ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||| | ||    
T  5035607 gcctcagagattttgaccaagaatcgaagacggttggtgatggagagaaactgttttgaaacgaaggaaagagacctgaaactactgtttgtgattggca 5035706  T
Q  525 gatcttgttttgagacgtggtagagagaccttattctgcgggggt 569  Q
     |||||||| ||||||||| ||||||||| |||||||||||||||    
T  5035707 tatcttgttctgagacgtgatagagagactttattctgcgggggt 5035751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 26 - 564
Target Start/End: Original strand, 2525339 - 2525881
Alignment:
Q  26 gagttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttc 125  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||  |||| |||    ||||||||||||||||||||||||||||    
T  2525339 gagttaaagcaatcctgcggagtttgggaagcgccaagaattgatcatcactatctatcacacagttactacgacaaccagtgtcggtaaggatgagttc 2525438  T
Q  126 ttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttg 225  Q
    ||||||   |||||||||||||||||||| |   |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  2525439 ttcgagtagagggaaacaatcagcaatgaagagcagatcattcttgttaataaatctcagttgataacaagtgagagatgtcaaatttttcattttcttg 2525538  T
Q  226 gacaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgc 325  Q
    |||||| | || |||||||||| ||| ||  ||   ||||||||||||||||| |||||||||||||||||| |||| |||||||||  ||||||||| |    
T  2525539 gacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtctaaagggaaagtggagatttggtttagaaactcac 2525638  T
Q  326 cgaggtcggcttctcggtccccc---ttaag-gagagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagt 421  Q
     |||||| ||||||||| |||||   |  || |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||      
T  2525639 tgaggtcagcttctcgggcccccgcatcgagagagagagagtgatattgagtgatgcaatgttagggaacctttcaaagagacgattaagaaaagggata 2525738  T
Q  422 gtagctttggagattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaactactgttggtgatgg 521  Q
    || || ||||||||| |||||||||||||||| |  |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||    
T  2525739 gttgcattggagattgtgaccaagaatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagatctgaaactaccgttggtgatgg 2525838  T
Q  522 acagatcttgttttgagacgtggtagagagaccttattctgcg 564  Q
      |||  |||||||||||||||||||||||  | |||||||||    
T  2525839 gtagagattgttttgagacgtggtagagagttcctattctgcg 2525881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 26 - 419
Target Start/End: Original strand, 2533897 - 2534294
Alignment:
Q  26 gagttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttc 125  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  2533897 gagttaaagcaatcctgcggagtttgggaagcgccaagaattgatcatcactatctatcgcacaattatggggacaaccagagtcggtaaggatgagttc 2533996  T
Q  126 ttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttg 225  Q
    ||| ||  ||||||||||||||||||| | |  ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||    
T  2533997 ttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatcttcttg 2534096  T
Q  226 gacaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgc 325  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||    
T  2534097 gacaaagctcggaactcattttcaggaacactgtcagggtggtagagagtgagcgatttgaggtctaaagtggaagtagagagttcggctagaaactcgc 2534196  T
Q  326 c-gaggtcggcttctcggtc---ccccttaaggagagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaaggga 419  Q
    | |||||||||||| ||| |   || |  |  | |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||    
T  2534197 cagaggtcggcttcacggacaaaccacccatcgggagagagtgatattgagtgatgtaatattagggaacctttcaaagaggcggttaaggaaaggga 2534294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 30 - 507
Target Start/End: Original strand, 2490716 - 2491195
Alignment:
Q  30 taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttcttcg 129  Q
    |||||||||| ||||||||||||||||| |||  ||| |||||||| | ||||   || |||| ||||||  |||  ||||||| ||||||||||| |||    
T  2490716 taaagcaatcttgcggagtttgggaagcaccaataattgatcatcattgtctagcacataattttggggattaccgttgtcggttaggatgagttcgtcg 2490815  T
Q  130 agggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttggaca 229  Q
    ||  ||||||||||||||||||| |    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||  |||||    
T  2490816 agtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcatcgtcccggaca 2490915  T
Q  230 aagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgccgag 329  Q
    ||||||| || |||||| | || || |||   || | |||||||| ||| ||||||||||| |||||| |||| ||||||||  | |||| ||||| |||    
T  2490916 aagctcgcaattcatttgcgggaaccctgattggctcgtagagagcgagcgatttgaggtccaaagggaaagtggagatttgtccaagaagctcgctgag 2491015  T
Q  330 gtcggcttctcggtcccccttaagg--agagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgtagct 427  Q
    |||  ||||| ||| ||  |   ||  |||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||     
T  2491016 gtcaacttctaggttcctgtatcgggaagagagggtgatattgattgatgtaatgttagggaacctttcaaagagacgattaaggaaagggattgttgca 2491115  T
Q  428 ttggagattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaact 507  Q
    | ||||||| ||||| | ||||| || || || ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  2491116 tcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgttttgagacgagtgagagagacctgaaact 2491195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 30 - 486
Target Start/End: Original strand, 2518821 - 2519279
Alignment:
Q  30 taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttcttcg 129  Q
    |||||||||| |||||||||| |||||||||| |||| ||  |||| |||||||  |  ||| || || | ||   || ||||||||||||||||||| |    
T  2518821 taaagcaatcttgcggagtttaggaagcgccaagaattgaaaatcaatatctatcaccaaatcattggtataaatggtatcggtaaggatgagttctttg 2518920  T
Q  130 agggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttggaca 229  Q
    ||  ||||||||||||||||||||| |  |||||||||||||| |||| || |||||| ||||||||||||| |||||||||||||||| || |  ||||    
T  2518921 agtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatttttcatgttttgagaca 2519020  T
Q  230 aagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgccgag 329  Q
    ||||| | ||| | | || ||| |   ||  ||| |||||||||||||| ||| |||||||||||||| ||||  | |||| || ||||| ||||| |||    
T  2519021 aagcttgcaacccttctttaggaagggtgataggatggtagagagtgagcgatatgaggtctaaagggaaagtgcatattttggttagaagctcgctgag 2519120  T
Q  330 gtcggcttctcggtccc--ccttaaggagagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgtagct 427  Q
    || | ||||||||  ||   |||  | |||||||||||| || ||||||||||  || |||||||| ||||||||||||| ||||||||||| |||        
T  2519121 gttgtcttctcggagcctgtcttgggaagagagagtgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttga 2519220  T
Q  428 ttggagattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaac 486  Q
    |  |||||| ||||  || ||||||  || |||||||||||||||||||||||||||||    
T  2519221 tctgagattgtgactgaggatcgaaaacggttggtgatggacagaaactgttttgaaac 2519279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 163 - 506
Target Start/End: Original strand, 2486021 - 2486373
Alignment:
Q  163 tcattcttgttgataaatctcatttgataacaagtga-------gagatgtcaaatttttcatcttcttggacaaagctcggaactcattttcaggcaca 255  Q
    |||||||||||||||||||| |||| ||||||| |||       |||||||||||||||||||||| |||||||||||||| |   ||||| |||| |      
T  2486021 tcattcttgttgataaatctaattttataacaattgactattgagagatgtcaaatttttcatctttttggacaaagctcgcagagcatttgcaggaagc 2486120  T
Q  256 ctgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatttgggctagaaactcgccgaggtcggcttctcggtcccc--cttaag 353  Q
    |||   || | |||||||||||||||||||||||| |||||| |||| ||||| || |  |||| ||||||||||||   ||||| || ||   |||  |    
T  2486121 ctgatgggctcgtagagagtgagtgatttgaggtccaaagggaaagtggagatatgtgtaagaagctcgccgaggtcactttctctgttcctgtcttggg 2486220  T
Q  354 gagagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgtagctttggagattttgaccaagaatcgaag 453  Q
     |||||||||||||||  | ||||||| |||||||||||  | ||||||||||| ||||||||||| |||    | ||||||| ||||| ||||||| ||    
T  2486221 aagagagagtgatattgtgggatgtaacattagggaacccataaaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggag 2486320  T
Q  454 gcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaac 506  Q
     || |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  2486321 acggttggtgatggacagaaactgttttgagacgagggagagagacctaaaac 2486373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 2536575 - 2536647
Alignment:
Q  430 ggagattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctg 502  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||||||||| ||||||||||||||||    
T  2536575 ggagattttgaccaagaatcgaagaaggttggtgatggacagaaactgttttgaaatgagggagagagacctg 2536647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 112 - 310
Target Start/End: Original strand, 2467212 - 2467413
Alignment:
Q  112 gtaaggatgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgata---aatctcatttgataacaagtgagagatgtca 208  Q
    ||||||||||| ||||||||  ||||||||||||||||||||| |   ||||| ||||||| ||||   ||    ||| | ||||||||||| |||||||    
T  2467212 gtaaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca 2467311  T
Q  209 aatttttcatcttcttggacaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagat 308  Q
    ||||||||||||  ||||| |||||||| ||| ||| | |||| ||  |    ||||||||||||||||| ||||||||||| |||||| |||| |||||    
T  2467312 aatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagat 2467411  T
Q  309 tt 310  Q
    ||    
T  2467412 tt 2467413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 356 - 507
Target Start/End: Original strand, 2467446 - 2467597
Alignment:
Q  356 gagagagtgatattaagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggagtgtagctttggagattttgaccaagaatcgaaggc 455  Q
    ||||||||||| | || |||| | ||||| |||||||||||||||||||||| ||| ||||||| |||  | | ||| ||   |||  |||||||||| |    
T  2467446 gagagagtgatgtcaattgatctgatattggggaacctttcaaagagacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagac 2467545  T
Q  456 gattggtgatggacagaaactgttttgaaacgagggagagagacctgaaact 507  Q
      ||||| ||||||| |||||||||||| |||| |||||||||| |||||||    
T  2467546 tgttggtaatggacaaaaactgttttgagacgacggagagagacttgaaact 2467597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 2547221 - 2547353
Alignment:
Q  119 tgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcat 218  Q
    |||||||||| ||  ||||||||||||||||||||| |   | |||||||||| |||||||  | ||||   ||||| ||||||| ||||||||||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcat 2547320  T
Q  219 cttcttggacaaagctcggaactcattttcagg 251  Q
    ||| |  ||||||||||| ||| ||||| ||||    
T  2547321 cttttcagacaaagctcgcaacccatttgcagg 2547353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 2621540 - 2621417
Alignment:
Q  113 taaggatgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatt 212  Q
    ||||| |||||||||||||  |||||||||||||||||| || |   ||||||||||||  |||     | ||| | |||||||||||||||||||||||    
T  2621540 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatt 2621441  T
Q  213 tttcatcttcttggacaaagctcg 236  Q
    |||||| || ||||| ||||||||    
T  2621440 tttcatatttttggagaaagctcg 2621417  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 2361262 - 2361217
Alignment:
Q  191 aacaagtgagagatgtcaaatttttcatcttcttggacaaagctcg 236  Q
    |||||||||||||||||||||||||||| || ||||||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcg 2361217  T

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Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 2381690 - 2381641
Alignment:
Q  191 aacaagtgagagatgtcaaatttttcatcttcttggacaaagctcggaac 240  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaac 2381641  T

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Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 2391318 - 2391269
Alignment:
Q  191 aacaagtgagagatgtcaaatttttcatcttcttggacaaagctcggaac 240  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  2391318 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaac 2391269  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 12124594 - 12124634
Alignment:
Q  191 aacaagtgagagatgtcaaatttttcatcttcttggacaaa 231  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  12124594 aacaagtgagagaggtcaaatttttcatctttttggacaaa 12124634  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 2482529 - 2482559
Alignment:
Q  191 aacaagtgagagatgtcaaatttttcatctt 221  Q
    |||||||||||||||||||||||||||||||    
T  2482529 aacaagtgagagatgtcaaatttttcatctt 2482559  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 507
Target Start/End: Complemental strand, 5106380 - 5106306
Alignment:
Q  433 gattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaact 507  Q
    |||| ||||| |||||||| | || ||||||||||||| |||||||||||| |||   ||||||||| |||||||    
T  5106380 gattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttttgagacggcagagagagacttgaaact 5106306  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 5106686 - 5106632
Alignment:
Q  118 atgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgt 172  Q
    ||||||||||||||  ||||||||||||||||||||| |  ||||||| ||||||    
T  5106686 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 5106632  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 2477156 - 2477201
Alignment:
Q  30 taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatca 75  Q
    |||||||||| |||||||||||||||||||||  ||| ||||||||    
T  2477156 taaagcaatcttgcggagtttgggaagcgccaacaattgatcatca 2477201  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 2368033 - 2367981
Alignment:
Q  120 gagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgt 172  Q
    ||||||||||||  ||||||||||||||||||||| |  ||||||| ||||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 2367981  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 2393888 - 2393836
Alignment:
Q  196 gtgagagatgtcaaattttt-catcttcttggacaaagctcggaactcatttt 247  Q
    |||||||||||||||||||| |||||| | |||||||||||| ||| ||||||    
T  2393888 gtgagagatgtcaaattttttcatcttttgggacaaagctcgcaacccatttt 2393836  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 499
Target Start/End: Complemental strand, 44575227 - 44575183
Alignment:
Q  455 cgattggtgatggacagaaactgttttgaaacgagggagagagac 499  Q
    ||||||||||| || |||||||||||||| |||| ||||||||||    
T  44575227 cgattggtgattgagagaaactgttttgagacgatggagagagac 44575183  T

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