View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21036_high_37 (Length: 252)
Name: NF21036_high_37
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_high_37 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 39775584 - 39775359
Alignment:
| Q |
15 |
cctggtgcaaggtgagaacatctgaatggattctaatagattctcctctgacacatttgacagagtttgaaacatttggaattgtaacaccaccaggaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39775584 |
cctggtgcaaggtgagaacatctgaatggattctaatagattctcctctgacacatttgacagagtttgaaacatttggaattgtaacaccaccaggaag |
39775485 |
T |
|
| Q |
115 |
ctccaaatgacggcagtgttgttgattattgatgaagatcaaaggtgaaccaatactcttacaattgtcaaagttgatacccagtgttatgtcaaaaccc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39775484 |
ctccaaatgacggcagtgttgttgattattgatgaagatcaaaggtgaaccaatactcttacaattgtcaaagttgatatccagtgttatgtcaaaaccc |
39775385 |
T |
|
| Q |
215 |
aatccaattgagtttattgctttctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
39775384 |
aatccaattgagtttattgctttctg |
39775359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 39793446 - 39793227
Alignment:
| Q |
15 |
cctggtgcaaggtgagaacatctgaatggattctaatagattctcctctgacacatttgacagagtttgaaacatttggaattgtaacaccaccaggaag |
114 |
Q |
| |
|
|||| |||| || |||||||||||||| |||||||||||||||||||| |||||| ||| ||| |||||||||| |||||||| ||| || || |||| |
|
|
| T |
39793446 |
cctgttgcagggagagaacatctgaattgattctaatagattctcctccaacacatctgatagaatttgaaacatctggaattgaaacccctcccggaat |
39793347 |
T |
|
| Q |
115 |
ctccaaatgacggcagtgttgttgattattgatgaagatcaaaggtgaaccaatactcttacaattgtcaaagttgatacccagtgttatgtcaaaaccc |
214 |
Q |
| |
|
||||||| ||||||| |||| | |||| ||||| |||||| ||||||| | ||||||| ||||||||||||||| | |||||| ||||||||| |
|
|
| T |
39793346 |
ctccaaacgacggcactgttct---ttatcgatgaggatcaaccgtgaacc---agtcttacagttgtcaaagttgatatcttgtgttaaatcaaaaccc |
39793253 |
T |
|
| Q |
215 |
aatccaattgagtttattgctttctg |
240 |
Q |
| |
|
|| |||| | ||||||||||||||| |
|
|
| T |
39793252 |
aacccaagtatgtttattgctttctg |
39793227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 39781528 - 39781453
Alignment:
| Q |
23 |
aaggtgagaacatctgaatggattctaatagattctcctctgacacatttgacagagtttgaaacatttggaattg |
98 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||| ||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
39781528 |
aaggtgagaacatcagaattgattctaatagactctcctccgacacatctgatagagcttgaaacatttggaattg |
39781453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 39787923 - 39787883
Alignment:
| Q |
22 |
caaggtgagaacatctgaatggattctaatagattctcctc |
62 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
39787923 |
caaggtgaggatatctgaattgattctaatagattctcctc |
39787883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University