View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_high_4 (Length: 588)
Name: NF21036_high_4
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 36056195 - 36055626
Alignment:
| Q |
1 |
tattaagtaaaaaacggtgtccaaaatgtctatcccttccgaccatactcaagagggggtacctcagggttcaatgtaagagttgcaaaggcaattatac |
100 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056195 |
tattaagtaaaaattggtgtccaaaacgtctatcccttccgtccatactcaagagggggtacctcagggttcaatgtaagagttgcaaaggcaattatac |
36056096 |
T |
|
| Q |
101 |
tactgcttgaactagtatatgggcttaaaggtagaaattcacaagtatttacttgttcgtgtaatttaaattcgtcatgctgctaatttggtattaaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056095 |
tactgcttgaactagtatatgggcttaaaggtagaaattcacaaggatttacttgttcgtgtaatttaaattcgtcatgctgctaatttggtattaaagt |
36055996 |
T |
|
| Q |
201 |
ttgtccgacaatggggtttggggatgtttaagatgcatatatttaaatatgttttatcagaaaaacgttgttggaggttaatggtagagcacggaggttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
36055995 |
ttgtccgacaatggggtttggggatgtttaagatgcgtatatttaaatatgttttatcagaaaaacgttgttggaggttaatagtagagcacagaggttg |
36055896 |
T |
|
| Q |
301 |
tagtttaaaattagggtgttcatgtttcataaacaatctgaattggatc------atggtttggttcaatctttaaaaacaactttaattaaaaagggag |
394 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36055895 |
tagtttaaaattagggtgttcatgtttcataaaccatctgaattggatcacaacgatggtttggttcaatctttaaaaacaactttaattaaaaagggag |
36055796 |
T |
|
| Q |
395 |
atgttatatatcccgacnnnnnnntacagcgaaatcatcccaaatgcagtgtagtgattggatttatcaattgagtaaaatacatgagcagatgaaaatt |
494 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36055795 |
atgttatatatcccgacaaaaaaatacagcgaaatcatcccaaatgcagtgtagtgattggatttatcaattgagtaaaatacatgagcagatgaaaatt |
36055696 |
T |
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| Q |
495 |
aaaggggctcaccagtagtcatacatatttgcacgtcgtgattatcttggtatgaattttctcgctatat |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36055695 |
aaaggggctcaccagtagtcatacatatttgcacgtcgtgattatcttgggatgaattttctcgctatat |
36055626 |
T |
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