View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21036_high_5 (Length: 501)

Name: NF21036_high_5
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21036_high_5
NF21036_high_5
[»] chr7 (3 HSPs)
chr7 (7-145)||(38778154-38778292)
chr7 (411-484)||(38777784-38777857)
chr7 (237-274)||(43333120-43333157)
[»] chr8 (1 HSPs)
chr8 (233-274)||(5324988-5325029)
[»] chr2 (1 HSPs)
chr2 (238-274)||(34131620-34131656)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 38778292 - 38778154
Alignment:
Q  7 agtggagtagcataggataaataattggttgattttatctttctttttattggtgcaccaaacaagatatttttgtaagatataataattttatgactcc 106  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  38778292 agtggagtaggataggataaataattggttgattttatcttt-tttttattggtgcaccaaacaagatatttttgtaggatataataattttatgactcg 38778194  T
Q  107 ctcaata-ttannnnnnnatcatatattgtctccctcaag 145  Q
    ||||||| |||       ||||||||||||||||||||||    
T  38778193 ctcaatatttatttttttatcatatattgtctccctcaag 38778154  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 411 - 484
Target Start/End: Complemental strand, 38777857 - 38777784
Alignment:
Q  411 gaagacaccgtcaaaaaattggggactaacgatagtgcagtttaaaatattcatcaattcctgtaacaaaaaac 484  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38777857 gaagacactgtcaaaaaattggcgactaacgatagtgcagtttaaaatattcatcaattcctgtaacaaaaaac 38777784  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 43333120 - 43333157
Alignment:
Q  237 atttttacaatattttatgcatttcattaaaaaataca 274  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  43333120 atttttacaatattctatacatttcattaaaaaataca 43333157  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 5324988 - 5325029
Alignment:
Q  233 agatatttttacaatattttatgcatttcattaaaaaataca 274  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  5324988 agatatttttacaatattctacacatttcattaaaaaataca 5325029  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 34131620 - 34131656
Alignment:
Q  238 tttttacaatattttatgcatttcattaaaaaataca 274  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  34131620 tttttacaatattctatacatttcattaaaaaataca 34131656  T

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