View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_low_1 (Length: 660)
Name: NF21036_low_1
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 11 - 644
Target Start/End: Complemental strand, 981046 - 980409
Alignment:
| Q |
11 |
caaaggagggcgtacgaaatggtttgttctaatgtg-agaatcatattttggttgtatttttgcaaatttagtttcaggttacctaccatactataactt |
109 |
Q |
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||||||||||| |||||||||||| |||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
981046 |
caaaggagggcatacgaaatggtt-gttccaatgtgtaaaatcatattttggtagtatttttgcaaatttagtttcaggttacctatcatactctaactt |
980948 |
T |
|
| Q |
110 |
tttctttgctttaacataatgtgataggagacagatttgagaagacccatttgtcgagctgaggttatagtgacaacttggttaaggaaagacagaacct |
209 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| |
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| T |
980947 |
tttctttgctttaacataatatgataggagacagaattgagaagacccatttgtcgagctgaggttatagtgacaacttggttgaagaaagacggaacct |
980848 |
T |
|
| Q |
210 |
attcaactaaatatgcagaaaacatggttgtaagtttgtatagctttttt--acccaattgtaggtacctctgaagtttgatattacatattgtatatat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
980847 |
attcaactaaatatgcagaaaacatggttgtaagtttgtatagattttttttacccagttgtaggtacctctgaagtttgatattacatattgtatatat |
980748 |
T |
|
| Q |
308 |
ttgacttacactttgtaaattaaaaacatattcgttattgttttcacaaacaaccctgcacattggcttttccttggcacctagaaaatatacagttgtg |
407 |
Q |
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|| |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
980747 |
ttaacttacacattgtaaattaaaaacatattagttgttgttttcacaaacaaccctgcacattggcttttccctggcacctagaaaatatacagttgtg |
980648 |
T |
|
| Q |
408 |
aattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctagattcacttctacaattttgctaattaaaat |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||| |
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| T |
980647 |
aattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctagactcacttatacaatttttctaattaaaat |
980548 |
T |
|
| Q |
508 |
ttactactaaagtttgtttagagtaatgaaggagcttgactacttcta--nnnnnnnnaaaaccccggttaattggtttgaggacttgaactttccactt |
605 |
Q |
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| T |
980547 |
ttactactaaagtttgtttagagtaatgaaggagcttgactacttctaatttttttttaaaaccccggttaattggtttgaggacttgaactttccactt |
980448 |
T |
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| Q |
606 |
ctaggctaaagttttaaatcacttgcccgaagatcaaaa |
644 |
Q |
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| T |
980447 |
ctaggctaaagttttaaatcacttgcccgaagatcaaaa |
980409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 406 - 644
Target Start/End: Complemental strand, 27146762 - 27146523
Alignment:
| Q |
406 |
tgaattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctagattcacttctacaattttgctaattaaa |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27146762 |
tgaattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctagactcacttctacaattttgctaattaaa |
27146663 |
T |
|
| Q |
506 |
atttactactaaagtttgtttagagtaatgaaggagcttgactacttct-annnnnnnnaaaaccccggttaattggtttgaggacttgaactttccact |
604 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27146662 |
atttactactaaagtttgtttagagtaatgaaggagcttgactacttctaattttttttaaaaccccgtttaattggtttgaggacttgaactttccact |
27146563 |
T |
|
| Q |
605 |
tctaggctaaagttttaaatcacttgcccgaagatcaaaa |
644 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
27146562 |
tctaggctaaagttttaaatcacttgcccgaagatcaaaa |
27146523 |
T |
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