View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21036_low_10 (Length: 496)
Name: NF21036_low_10
Description: NF21036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21036_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Complemental strand, 981046 - 980577
Alignment:
| Q |
11 |
caaaggagggcgtacgaaatggtttgttctaatgtg-agaatcatattttggttgtatttttgcaaatttagtttcaggttacctaccatactataactt |
109 |
Q |
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| T |
981046 |
caaaggagggcatacgaaatggtt-gttccaatgtgtaaaatcatattttggtagtatttttgcaaatttagtttcaggttacctatcatactctaactt |
980948 |
T |
|
| Q |
110 |
tttctttgctttaacataatgtgataggagacagatttgagaagacccatttgtcgagctgaggttatagtgacaacttggttaaggaaagacagaacct |
209 |
Q |
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| T |
980947 |
tttctttgctttaacataatatgataggagacagaattgagaagacccatttgtcgagctgaggttatagtgacaacttggttgaagaaagacggaacct |
980848 |
T |
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| Q |
210 |
attcaactaaatatgcagaaaacatggttgtaagtttgtatagctttttt--acccaattgtaggtacctctgaagtttgatattacatattgtatatat |
307 |
Q |
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| T |
980847 |
attcaactaaatatgcagaaaacatggttgtaagtttgtatagattttttttacccagttgtaggtacctctgaagtttgatattacatattgtatatat |
980748 |
T |
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| Q |
308 |
ttgacttacactttgtaaattaaaaacatattcgttattgttttcacaaacaaccctgcacattggcttttccttggcacctagaaaatatacagttgtg |
407 |
Q |
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| T |
980747 |
ttaacttacacattgtaaattaaaaacatattagttgttgttttcacaaacaaccctgcacattggcttttccctggcacctagaaaatatacagttgtg |
980648 |
T |
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| Q |
408 |
aattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctaga |
478 |
Q |
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| T |
980647 |
aattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctaga |
980577 |
T |
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Back To:
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Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 406 - 478
Target Start/End: Complemental strand, 27146762 - 27146690
Alignment:
| Q |
406 |
tgaattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctaga |
478 |
Q |
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| T |
27146762 |
tgaattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctaga |
27146690 |
T |
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